National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12   1                                
E     16                       1            
F     9                                    
H     3                                    
I     30           1                   1    
K     12                                    
L     24               1                    
M     9                                    
N     12                                    
P     3                                    
Q     9               1                    
R     3                           1        
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                   1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Colombia 27202 A 287 287
1 Colombia 27203 T 287 287
2 Colombia 27204 G 287 287
3 Colombia 27205 T 287 287
4 Colombia 27206 T 287 287
5 Colombia 27207 T 287 287
6 Colombia 27208 C 287 287
7 Colombia 27209 A 287 287
8 Colombia 27210 T 287 287
9 Colombia 27211 C 287 287
10 Colombia 27212 T 287 287
11 Colombia 27213 C 287 287
12 Colombia 27214 G 287 287
13 Colombia 27215 T 287 287
14 Colombia 27216 T 287 287
15 Colombia 27217 G 287 287
16 Colombia 27218 A 287 287
17 Colombia 27219 C 287 287
18 Colombia 27220 T 287 287
19 Colombia 27221 T 287 287
20 Colombia 27222 T 287 287
21 Colombia 27223 C 287 287
22 Colombia 27224 A 287 287
23 Colombia 27225 G 287 287
24 Colombia 27226 G 287 287
25 Colombia 27227 T 287 287
26 Colombia 27228 T 287 287
27 Colombia 27229 A 287 287
28 Colombia 27230 C 287 287
29 Colombia 27231 T 287 287
30 Colombia 27232 A 287 287
31 Colombia 27233 T 287 287
32 Colombia 27234 A 287 287
33 Colombia 27235 G 287 287
34 Colombia 27236 C 287 287
35 Colombia 27237 A 287 287
36 Colombia 27238 G 287 287
37 Colombia 27239 A 287 287
38 Colombia 27240 G 287 287
39 Colombia 27241 A 287 287
40 Colombia 27242 T 287 287
41 Colombia 27243 A 287 287
42 Colombia 27244 T 287 287
43 Colombia 27245 T 287 287
44 Colombia 27246 A 287 287
45 Colombia 27247 C 287 287
46 Colombia 27248 T 287 287
47 Colombia 27249 A 287 287
48 Colombia 27250 A 287 287
49 Colombia 27251 T 287 287
50 Colombia 27252 T 287 287
51 Colombia 27253 A G 287 286 Ile18Val
52 Colombia 27254 T 287 287
53 Colombia 27255 T 287 287
54 Colombia 27256 A 287 287
55 Colombia 27257 T 287 287
56 Colombia 27258 G 287 287
57 Colombia 27259 A 287 287
58 Colombia 27260 G 287 287
59 Colombia 27261 G T 287 285 Arg20Ser
60 Colombia 27262 A 287 287
61 Colombia 27263 C 287 287
62 Colombia 27264 T 287 287
63 Colombia 27265 T 287 287
64 Colombia 27266 T 287 287
65 Colombia 27267 T 287 287
66 Colombia 27268 A 287 287
67 Colombia 27269 A 287 287
68 Colombia 27270 A 287 287
69 Colombia 27271 G 287 287
70 Colombia 27272 T 287 287
71 Colombia 27273 T 287 287
72 Colombia 27274 T 287 287
73 Colombia 27275 C 287 287
74 Colombia 27276 C 287 287
75 Colombia 27277 A 287 287
76 Colombia 27278 T 287 287
77 Colombia 27279 T 287 287
78 Colombia 27280 T 287 287
79 Colombia 27281 G 287 287
80 Colombia 27282 G 287 287
81 Colombia 27283 A 287 287
82 Colombia 27284 A 287 287
83 Colombia 27285 T 287 287
84 Colombia 27286 C 287 287
85 Colombia 27287 T 287 287
86 Colombia 27288 T 287 287
87 Colombia 27289 G 287 287
88 Colombia 27290 A 287 287
89 Colombia 27291 T 287 287
90 Colombia 27292 T 287 287
91 Colombia 27293 A 287 287
92 Colombia 27294 C T 287 286 Tyr31Tyr
93 Colombia 27295 A 287 287
94 Colombia 27296 T 287 287
95 Colombia 27297 C T 287 286 Ile32Ile
96 Colombia 27298 A 287 287
97 Colombia 27299 T 287 287
98 Colombia 27300 A 287 287
99 Colombia 27301 A 287 287
100 Colombia 27302 A 287 287
101 Colombia 27303 C 287 287
102 Colombia 27304 C 287 287
103 Colombia 27305 T 287 287
104 Colombia 27306 C T 287 286 Leu35Leu
105 Colombia 27307 A 287 287
106 Colombia 27308 T 287 287
107 Colombia 27309 A 287 287
108 Colombia 27310 A 287 287
109 Colombia 27311 T 287 287
110 Colombia 27312 T 287 287
111 Colombia 27313 A 287 287
112 Colombia 27314 A 287 287
113 Colombia 27315 A 287 287
114 Colombia 27316 A 287 287
115 Colombia 27317 A 287 287
116 Colombia 27318 T 287 287
117 Colombia 27319 T 287 287
118 Colombia 27320 T 287 287
119 Colombia 27321 A 287 287
120 Colombia 27322 T 287 287
121 Colombia 27323 C 287 287
122 Colombia 27324 T 287 287
123 Colombia 27325 A 287 287
124 Colombia 27326 A 287 287
125 Colombia 27327 G 287 287
126 Colombia 27328 T 287 287
127 Colombia 27329 C 287 287
128 Colombia 27330 A 287 287
129 Colombia 27331 C 287 287
130 Colombia 27332 T 287 287
131 Colombia 27333 A 287 287
132 Colombia 27334 A 287 287
133 Colombia 27335 C 287 287
134 Colombia 27336 T 287 287
135 Colombia 27337 G 287 287
136 Colombia 27338 A 287 287
137 Colombia 27339 G 287 287
138 Colombia 27340 A 287 287
139 Colombia 27341 A 287 287
140 Colombia 27342 T 287 287
141 Colombia 27343 A 287 287
142 Colombia 27344 A 287 287
143 Colombia 27345 A 287 287
144 Colombia 27346 T 287 287
145 Colombia 27347 A 287 287
146 Colombia 27348 T 287 287
147 Colombia 27349 T 287 287
148 Colombia 27350 C 287 287
149 Colombia 27351 T 287 287
150 Colombia 27352 C 287 287
151 Colombia 27353 A T 287 286 Gln51Leu
152 Colombia 27354 A 287 287
153 Colombia 27355 T 287 287
154 Colombia 27356 T 287 287
155 Colombia 27357 A 287 287
156 Colombia 27358 G 287 287
157 Colombia 27359 A 287 287
158 Colombia 27360 T 287 287
159 Colombia 27361 G 287 287
160 Colombia 27362 A 287 287
161 Colombia 27363 A 287 287
162 Colombia 27364 G C 287 285 Glu55Gln
163 Colombia 27365 A 287 287
164 Colombia 27366 G 287 287
165 Colombia 27367 C 287 287
166 Colombia 27368 A 287 287
167 Colombia 27369 A 287 287
168 Colombia 27370 C 287 287
169 Colombia 27371 C 287 287
170 Colombia 27372 A 287 287
171 Colombia 27373 A 287 287
172 Colombia 27374 T 287 287
173 Colombia 27375 G 287 287
174 Colombia 27376 G 287 287
175 Colombia 27377 A 287 287
176 Colombia 27378 G 287 287
177 Colombia 27379 A 287 287
178 Colombia 27380 T 287 287
179 Colombia 27381 T 287 287
180 Colombia 27382 G 287 287
181 Colombia 27383 A 287 287
182 Colombia 27384 T C 287 286 Asp61Asp
183 Colombia 27385 T 287 287
184 Colombia 27386 A 287 287
185 Colombia 27387 A 287 287