National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                       1            
-     186                                    
?                                          
A     3                                    
D     12   1     1                         1
E     16                                    
F     9                                    
H     3                                   1
I     30           1                 1      
K     12                                    
L     24       1       2                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9 1         2                        
V     9                                    
W     3                                    
Y 1   6                                   1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Chile 27202 A 963 963
1 Chile 27203 T 963 963
2 Chile 27204 G 963 963
3 Chile 27205 T 963 963
4 Chile 27206 T 963 963
5 Chile 27207 T 963 963
6 Chile 27208 C T 963 962 His3Tyr
7 Chile 27209 A 963 963
8 Chile 27210 T 963 963
9 Chile 27211 C 963 963
10 Chile 27212 T 963 963
11 Chile 27213 C 963 963
12 Chile 27214 G 963 963
13 Chile 27215 T 963 963
14 Chile 27216 T 963 963
15 Chile 27217 G T 963 961 Asp6Tyr
16 Chile 27218 A 963 963
17 Chile 27219 C 963 963
18 Chile 27220 T 963 963
19 Chile 27221 T 963 963
20 Chile 27222 T 963 963
21 Chile 27223 C 963 963
22 Chile 27224 A 963 963
23 Chile 27225 G 963 963
24 Chile 27226 G 963 963
25 Chile 27227 T 963 963
26 Chile 27228 T 963 963
27 Chile 27229 A 963 963
28 Chile 27230 C 963 963
29 Chile 27231 T 963 963
30 Chile 27232 A 963 963
31 Chile 27233 T 963 963
32 Chile 27234 A 963 963
33 Chile 27235 G 963 963
34 Chile 27236 C 963 963
35 Chile 27237 A 963 963
36 Chile 27238 G 963 963
37 Chile 27239 A 963 963
38 Chile 27240 G 963 963
39 Chile 27241 A 963 963
40 Chile 27242 T 963 963
41 Chile 27243 A 963 963
42 Chile 27244 T 963 963
43 Chile 27245 T 963 963
44 Chile 27246 A 963 963
45 Chile 27247 C T 963 962 Leu16Leu
46 Chile 27248 T 963 963
47 Chile 27249 A 963 963
48 Chile 27250 A 963 963
49 Chile 27251 T 963 963
50 Chile 27252 T 963 963
51 Chile 27253 A 963 963
52 Chile 27254 T 963 963
53 Chile 27255 T 963 963
54 Chile 27256 A 963 963
55 Chile 27257 T 963 963
56 Chile 27258 G 963 963
57 Chile 27259 A 963 963
58 Chile 27260 G 963 963
59 Chile 27261 G 963 963
60 Chile 27262 A G 963 962 Thr21Ala
61 Chile 27263 C T 963 962 Thr21Ile
62 Chile 27264 T 963 963
63 Chile 27265 T 963 963
64 Chile 27266 T 963 963
65 Chile 27267 T 963 963
66 Chile 27268 A 963 963
67 Chile 27269 A 963 963
68 Chile 27270 A 963 963
69 Chile 27271 G 963 963
70 Chile 27272 T 963 963
71 Chile 27273 T 963 963
72 Chile 27274 T 963 963
73 Chile 27275 C 963 963
74 Chile 27276 C 963 963
75 Chile 27277 A 963 963
76 Chile 27278 T 963 963
77 Chile 27279 T 963 963
78 Chile 27280 T 963 963
79 Chile 27281 G 963 963
80 Chile 27282 G 963 963
81 Chile 27283 A 963 963
82 Chile 27284 A 963 963
83 Chile 27285 T 963 963
84 Chile 27286 C T 963 961 Leu29Phe
85 Chile 27287 T 963 963
86 Chile 27288 T C 963 962 Leu29Leu
87 Chile 27289 G 963 963
88 Chile 27290 A 963 963
89 Chile 27291 T 963 963
90 Chile 27292 T 963 963
91 Chile 27293 A 963 963
92 Chile 27294 C T,A 963 960 Tyr31*-p.Tyr31Tyr
93 Chile 27295 A 963 963
94 Chile 27296 T 963 963
95 Chile 27297 C A 963 959 Ile32Ile
96 Chile 27298 A 963 963
97 Chile 27299 T C 963 692 Ile33Thr
98 Chile 27300 A 963 963
99 Chile 27301 A 963 963
100 Chile 27302 A 963 963
101 Chile 27303 C 963 963
102 Chile 27304 C 963 963
103 Chile 27305 T 963 962
104 Chile 27306 C 963 963
105 Chile 27307 A 963 963
106 Chile 27308 T 963 963
107 Chile 27309 A 963 963
108 Chile 27310 A 963 963
109 Chile 27311 T 963 963
110 Chile 27312 T 963 963
111 Chile 27313 A 963 963
112 Chile 27314 A 963 963
113 Chile 27315 A 963 962
114 Chile 27316 A 963 963
115 Chile 27317 A 963 963
116 Chile 27318 T 963 963
117 Chile 27319 T 963 963
118 Chile 27320 T 963 963
119 Chile 27321 A 963 963
120 Chile 27322 T 963 963
121 Chile 27323 C 963 963
122 Chile 27324 T 963 963
123 Chile 27325 A 963 963
124 Chile 27326 A 963 963
125 Chile 27327 G 963 963
126 Chile 27328 T 963 963
127 Chile 27329 C 963 963
128 Chile 27330 A 963 963
129 Chile 27331 C 963 963
130 Chile 27332 T 963 963
131 Chile 27333 A 963 963
132 Chile 27334 A 963 963
133 Chile 27335 C T 963 962 Thr45Ile
134 Chile 27336 T 963 963
135 Chile 27337 G 963 963
136 Chile 27338 A 963 963
137 Chile 27339 G 963 963
138 Chile 27340 A 963 963
139 Chile 27341 A 963 963
140 Chile 27342 T 963 963
141 Chile 27343 A 963 963
142 Chile 27344 A 963 963
143 Chile 27345 A 963 963
144 Chile 27346 T 963 963
145 Chile 27347 A 963 963
146 Chile 27348 T 963 963
147 Chile 27349 T 963 963
148 Chile 27350 C 963 963
149 Chile 27351 T 963 963
150 Chile 27352 C 963 963
151 Chile 27353 A 963 963
152 Chile 27354 A 963 963
153 Chile 27355 T 963 963
154 Chile 27356 T 963 963
155 Chile 27357 A 963 963
156 Chile 27358 G 963 963
157 Chile 27359 A 963 963
158 Chile 27360 T 963 963
159 Chile 27361 G 963 963
160 Chile 27362 A 963 963
161 Chile 27363 A 963 963
162 Chile 27364 G 963 963
163 Chile 27365 A 963 963
164 Chile 27366 G 963 963
165 Chile 27367 C 963 963
166 Chile 27368 A 963 963
167 Chile 27369 A 963 963
168 Chile 27370 C 963 963
169 Chile 27371 C 963 963
170 Chile 27372 A 963 963
171 Chile 27373 A 963 963
172 Chile 27374 T 963 963
173 Chile 27375 G 963 963
174 Chile 27376 G 963 963
175 Chile 27377 A 963 963
176 Chile 27378 G 963 963
177 Chile 27379 A 963 963
178 Chile 27380 T 963 963
179 Chile 27381 T 963 963
180 Chile 27382 G C 963 961 Asp61His
181 Chile 27383 A 963 963
182 Chile 27384 T C 963 956 Asp61Asp
183 Chile 27385 T C 963 962 Ter62Glnext*?
184 Chile 27386 A 963 963
185 Chile 27387 A 951 951