National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24               1         1          
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Cameroon 27202 A 21 21
1 Cameroon 27203 T 21 21
2 Cameroon 27204 G 21 21
3 Cameroon 27205 T 21 21
4 Cameroon 27206 T 21 21
5 Cameroon 27207 T 21 21
6 Cameroon 27208 C 21 21
7 Cameroon 27209 A 21 21
8 Cameroon 27210 T 21 21
9 Cameroon 27211 C 21 21
10 Cameroon 27212 T 21 21
11 Cameroon 27213 C T 21 20 Leu4Leu
12 Cameroon 27214 G 21 21
13 Cameroon 27215 T 21 21
14 Cameroon 27216 T 21 21
15 Cameroon 27217 G 21 21
16 Cameroon 27218 A 21 21
17 Cameroon 27219 C 21 21
18 Cameroon 27220 T 21 21
19 Cameroon 27221 T 21 21
20 Cameroon 27222 T 21 21
21 Cameroon 27223 C 21 21
22 Cameroon 27224 A 21 21
23 Cameroon 27225 G 21 21
24 Cameroon 27226 G 21 21
25 Cameroon 27227 T 21 21
26 Cameroon 27228 T 21 21
27 Cameroon 27229 A 21 21
28 Cameroon 27230 C 21 21
29 Cameroon 27231 T 21 21
30 Cameroon 27232 A 21 21
31 Cameroon 27233 T 21 21
32 Cameroon 27234 A 21 21
33 Cameroon 27235 G 21 21
34 Cameroon 27236 C 21 21
35 Cameroon 27237 A 21 21
36 Cameroon 27238 G 21 21
37 Cameroon 27239 A 21 21
38 Cameroon 27240 G 21 21
39 Cameroon 27241 A 21 21
40 Cameroon 27242 T 21 21
41 Cameroon 27243 A 21 21
42 Cameroon 27244 T 21 21
43 Cameroon 27245 T 21 21
44 Cameroon 27246 A 21 21
45 Cameroon 27247 C 21 21
46 Cameroon 27248 T 21 21
47 Cameroon 27249 A 21 21
48 Cameroon 27250 A 21 21
49 Cameroon 27251 T 21 21
50 Cameroon 27252 T 21 21
51 Cameroon 27253 A 21 21
52 Cameroon 27254 T 21 21
53 Cameroon 27255 T 21 21
54 Cameroon 27256 A 21 21
55 Cameroon 27257 T 21 21
56 Cameroon 27258 G 21 21
57 Cameroon 27259 A 21 21
58 Cameroon 27260 G 21 21
59 Cameroon 27261 G 21 21
60 Cameroon 27262 A 21 21
61 Cameroon 27263 C 21 21
62 Cameroon 27264 T 21 21
63 Cameroon 27265 T 21 21
64 Cameroon 27266 T 21 21
65 Cameroon 27267 T 21 21
66 Cameroon 27268 A 21 21
67 Cameroon 27269 A 21 21
68 Cameroon 27270 A 21 21
69 Cameroon 27271 G 21 21
70 Cameroon 27272 T 21 21
71 Cameroon 27273 T 21 21
72 Cameroon 27274 T 21 21
73 Cameroon 27275 C 21 21
74 Cameroon 27276 C 21 21
75 Cameroon 27277 A 21 21
76 Cameroon 27278 T 21 21
77 Cameroon 27279 T 21 21
78 Cameroon 27280 T 21 21
79 Cameroon 27281 G 21 21
80 Cameroon 27282 G 21 21
81 Cameroon 27283 A 21 21
82 Cameroon 27284 A 21 21
83 Cameroon 27285 T 21 21
84 Cameroon 27286 C 21 21
85 Cameroon 27287 T 21 21
86 Cameroon 27288 T 21 21
87 Cameroon 27289 G 21 21
88 Cameroon 27290 A 21 21
89 Cameroon 27291 T 21 21
90 Cameroon 27292 T 21 21
91 Cameroon 27293 A 21 21
92 Cameroon 27294 C 21 21
93 Cameroon 27295 A 21 21
94 Cameroon 27296 T 21 21
95 Cameroon 27297 C 21 21
96 Cameroon 27298 A 21 21
97 Cameroon 27299 T 21 21
98 Cameroon 27300 A 21 21
99 Cameroon 27301 A 21 21
100 Cameroon 27302 A 21 21
101 Cameroon 27303 C 21 21
102 Cameroon 27304 C 20 20
103 Cameroon 27305 T G 19 17 Leu35Arg
104 Cameroon 27306 C 19 18
105 Cameroon 27307 A 19 18
106 Cameroon 27308 T 19 18
107 Cameroon 27309 A 19 18
108 Cameroon 27310 A 19 18
109 Cameroon 27311 T 19 18
110 Cameroon 27312 T 19 18
111 Cameroon 27313 A 19 18
112 Cameroon 27314 A 19 18
113 Cameroon 27315 A 19 18
114 Cameroon 27316 A 19 18
115 Cameroon 27317 A 19 18
116 Cameroon 27318 T 19 18
117 Cameroon 27319 T 19 18
118 Cameroon 27320 T 19 18
119 Cameroon 27321 A 19 18
120 Cameroon 27322 T 19 18
121 Cameroon 27323 C 19 18
122 Cameroon 27324 T 19 18
123 Cameroon 27325 A 19 18
124 Cameroon 27326 A 19 18
125 Cameroon 27327 G 19 18
126 Cameroon 27328 T 19 18
127 Cameroon 27329 C 19 19
128 Cameroon 27330 A 19 19
129 Cameroon 27331 C 19 19
130 Cameroon 27332 T 19 19
131 Cameroon 27333 A 19 19
132 Cameroon 27334 A 19 19
133 Cameroon 27335 C 19 19
134 Cameroon 27336 T 19 18
135 Cameroon 27337 G 19 18
136 Cameroon 27338 A 19 18
137 Cameroon 27339 G 19 18
138 Cameroon 27340 A 19 18
139 Cameroon 27341 A 19 18
140 Cameroon 27342 T 19 18
141 Cameroon 27343 A 19 18
142 Cameroon 27344 A 19 18
143 Cameroon 27345 A 19 18
144 Cameroon 27346 T 19 18
145 Cameroon 27347 A 19 18
146 Cameroon 27348 T 19 18
147 Cameroon 27349 T 19 18
148 Cameroon 27350 C 19 18
149 Cameroon 27351 T 19 18
150 Cameroon 27352 C 19 19
151 Cameroon 27353 A 19 18
152 Cameroon 27354 A 19 16
153 Cameroon 27355 T 19 19
154 Cameroon 27356 T 19 19
155 Cameroon 27357 A 19 19
156 Cameroon 27358 G 19 19
157 Cameroon 27359 A 19 19
158 Cameroon 27360 T 19 19
159 Cameroon 27361 G 19 19
160 Cameroon 27362 A 19 19
161 Cameroon 27363 A 19 19
162 Cameroon 27364 G 19 19
163 Cameroon 27365 A 19 19
164 Cameroon 27366 G 19 19
165 Cameroon 27367 C 19 19
166 Cameroon 27368 A 19 19
167 Cameroon 27369 A 19 19
168 Cameroon 27370 C 19 19
169 Cameroon 27371 C 19 19
170 Cameroon 27372 A 19 19
171 Cameroon 27373 A 19 19
172 Cameroon 27374 T 19 19
173 Cameroon 27375 G 19 19
174 Cameroon 27376 G 19 19
175 Cameroon 27377 A 19 19
176 Cameroon 27378 G 19 19
177 Cameroon 27379 A 19 19
178 Cameroon 27380 T 19 19
179 Cameroon 27381 T 19 19
180 Cameroon 27382 G 19 19
181 Cameroon 27383 A 19 19
182 Cameroon 27384 T 19 19
183 Cameroon 27385 T 19 19
184 Cameroon 27386 A 19 19
185 Cameroon 27387 A 19 19