National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F H I K L M N P Q R S T V W Y
*     2                                      
-     186                                      
?                                            
A     3                                      
C                                            
D     12     1                                
E     16                                      
F     9         1                            
H     3                                      
I     30                 1                    
K     12                                      
L     24                 2                    
M     9                                      
N     12                     1                
P     3                                      
Q     9                                      
R     3                                      
S     12                                      
T     9                                      
V     9                                      
W     3                                      
Y     6   1                                 1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Cambodia 27202 A 4 4
1 Cambodia 27203 T 4 4
2 Cambodia 27204 G 4 4
3 Cambodia 27205 T 4 4
4 Cambodia 27206 T 4 4
5 Cambodia 27207 T 4 4
6 Cambodia 27208 C 4 4
7 Cambodia 27209 A 4 4
8 Cambodia 27210 T 4 4
9 Cambodia 27211 C 4 4
10 Cambodia 27212 T 4 4
11 Cambodia 27213 C 4 4
12 Cambodia 27214 G 4 4
13 Cambodia 27215 T 4 4
14 Cambodia 27216 T 4 4
15 Cambodia 27217 G 4 4
16 Cambodia 27218 A 4 4
17 Cambodia 27219 C 4 4
18 Cambodia 27220 T 4 4
19 Cambodia 27221 T 4 4
20 Cambodia 27222 T 4 4
21 Cambodia 27223 C 4 4
22 Cambodia 27224 A 4 4
23 Cambodia 27225 G 4 4
24 Cambodia 27226 G 4 4
25 Cambodia 27227 T 4 4
26 Cambodia 27228 T 4 4
27 Cambodia 27229 A 4 4
28 Cambodia 27230 C 4 4
29 Cambodia 27231 T 4 4
30 Cambodia 27232 A 4 4
31 Cambodia 27233 T 4 4
32 Cambodia 27234 A 4 4
33 Cambodia 27235 G 4 4
34 Cambodia 27236 C 4 4
35 Cambodia 27237 A 4 4
36 Cambodia 27238 G 4 4
37 Cambodia 27239 A 4 4
38 Cambodia 27240 G 4 4
39 Cambodia 27241 A 4 4
40 Cambodia 27242 T 4 4
41 Cambodia 27243 A 4 4
42 Cambodia 27244 T 4 4
43 Cambodia 27245 T 4 4
44 Cambodia 27246 A 4 4
45 Cambodia 27247 C T 4 2 Leu16Leu
46 Cambodia 27248 T 4 4
47 Cambodia 27249 A 4 4
48 Cambodia 27250 A 4 4
49 Cambodia 27251 T 4 4
50 Cambodia 27252 T 4 4
51 Cambodia 27253 A 4 4
52 Cambodia 27254 T 4 4
53 Cambodia 27255 T 4 4
54 Cambodia 27256 A 4 4
55 Cambodia 27257 T 4 4
56 Cambodia 27258 G 4 4
57 Cambodia 27259 A 4 4
58 Cambodia 27260 G 4 4
59 Cambodia 27261 G 4 4
60 Cambodia 27262 A 4 4
61 Cambodia 27263 C 4 4
62 Cambodia 27264 T 4 4
63 Cambodia 27265 T 4 4
64 Cambodia 27266 T 4 4
65 Cambodia 27267 T C 4 2 Phe22Phe
66 Cambodia 27268 A 4 4
67 Cambodia 27269 A 4 4
68 Cambodia 27270 A 4 4
69 Cambodia 27271 G 4 4
70 Cambodia 27272 T 4 4
71 Cambodia 27273 T 4 4
72 Cambodia 27274 T 4 4
73 Cambodia 27275 C 4 4
74 Cambodia 27276 C 4 4
75 Cambodia 27277 A 4 4
76 Cambodia 27278 T 4 4
77 Cambodia 27279 T 4 4
78 Cambodia 27280 T 4 4
79 Cambodia 27281 G 4 4
80 Cambodia 27282 G 4 4
81 Cambodia 27283 A 4 4
82 Cambodia 27284 A 4 4
83 Cambodia 27285 T C 4 2 Asn28Asn
84 Cambodia 27286 C 4 4
85 Cambodia 27287 T 4 4
86 Cambodia 27288 T 4 4
87 Cambodia 27289 G 4 4
88 Cambodia 27290 A 4 4
89 Cambodia 27291 T 4 4
90 Cambodia 27292 T 4 4
91 Cambodia 27293 A 4 4
92 Cambodia 27294 C T 4 2 Tyr31Tyr
93 Cambodia 27295 A 4 4
94 Cambodia 27296 T 4 4
95 Cambodia 27297 C 4 4
96 Cambodia 27298 A T 4 2 Ile33Leu
97 Cambodia 27299 T 4 4
98 Cambodia 27300 A 4 4
99 Cambodia 27301 A 4 4
100 Cambodia 27302 A 4 4
101 Cambodia 27303 C 4 4
102 Cambodia 27304 C 4 4
103 Cambodia 27305 T 4 4
104 Cambodia 27306 C 4 4
105 Cambodia 27307 A 4 4
106 Cambodia 27308 T 4 4
107 Cambodia 27309 A 4 4
108 Cambodia 27310 A 4 4
109 Cambodia 27311 T 4 4
110 Cambodia 27312 T 4 4
111 Cambodia 27313 A 4 4
112 Cambodia 27314 A 4 4
113 Cambodia 27315 A 4 4
114 Cambodia 27316 A 4 4
115 Cambodia 27317 A 4 4
116 Cambodia 27318 T 4 4
117 Cambodia 27319 T C 4 2 Leu40Leu
118 Cambodia 27320 T 4 4
119 Cambodia 27321 A 4 4
120 Cambodia 27322 T 4 4
121 Cambodia 27323 C 4 4
122 Cambodia 27324 T 4 4
123 Cambodia 27325 A 4 4
124 Cambodia 27326 A 4 4
125 Cambodia 27327 G 4 4
126 Cambodia 27328 T 4 4
127 Cambodia 27329 C 4 4
128 Cambodia 27330 A 4 4
129 Cambodia 27331 C 4 4
130 Cambodia 27332 T 4 4
131 Cambodia 27333 A 4 4
132 Cambodia 27334 A 4 4
133 Cambodia 27335 C 4 4
134 Cambodia 27336 T 4 4
135 Cambodia 27337 G 4 4
136 Cambodia 27338 A 4 4
137 Cambodia 27339 G 4 4
138 Cambodia 27340 A 4 4
139 Cambodia 27341 A 4 4
140 Cambodia 27342 T 4 4
141 Cambodia 27343 A 4 4
142 Cambodia 27344 A 4 4
143 Cambodia 27345 A 4 4
144 Cambodia 27346 T 4 4
145 Cambodia 27347 A G 4 2 Tyr49Cys
146 Cambodia 27348 T 4 4
147 Cambodia 27349 T 4 4
148 Cambodia 27350 C 4 4
149 Cambodia 27351 T 4 4
150 Cambodia 27352 C 4 4
151 Cambodia 27353 A 4 4
152 Cambodia 27354 A 4 4
153 Cambodia 27355 T 4 4
154 Cambodia 27356 T 4 4
155 Cambodia 27357 A 4 4
156 Cambodia 27358 G 4 4
157 Cambodia 27359 A 4 4
158 Cambodia 27360 T 4 4
159 Cambodia 27361 G 4 4
160 Cambodia 27362 A 4 4
161 Cambodia 27363 A 4 4
162 Cambodia 27364 G 4 4
163 Cambodia 27365 A 4 4
164 Cambodia 27366 G 4 4
165 Cambodia 27367 C 4 4
166 Cambodia 27368 A 4 4
167 Cambodia 27369 A 4 4
168 Cambodia 27370 C 4 4
169 Cambodia 27371 C 4 4
170 Cambodia 27372 A 4 4
171 Cambodia 27373 A 4 4
172 Cambodia 27374 T 4 4
173 Cambodia 27375 G 4 4
174 Cambodia 27376 G 4 4
175 Cambodia 27377 A 4 4
176 Cambodia 27378 G 4 4
177 Cambodia 27379 A 4 4
178 Cambodia 27380 T 4 4
179 Cambodia 27381 T 4 4
180 Cambodia 27382 G 4 4
181 Cambodia 27383 A 4 4
182 Cambodia 27384 T C 4 2 Asp61Asp
183 Cambodia 27385 T 4 4
184 Cambodia 27386 A 4 4
185 Cambodia 27387 A 4 4