National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Bulgaria 27202 A 15 15
1 Bulgaria 27203 T 15 15
2 Bulgaria 27204 G 15 15
3 Bulgaria 27205 T 15 15
4 Bulgaria 27206 T 15 15
5 Bulgaria 27207 T 15 15
6 Bulgaria 27208 C 15 15
7 Bulgaria 27209 A 15 15
8 Bulgaria 27210 T 15 15
9 Bulgaria 27211 C 15 15
10 Bulgaria 27212 T 15 15
11 Bulgaria 27213 C 15 15
12 Bulgaria 27214 G 15 15
13 Bulgaria 27215 T 15 15
14 Bulgaria 27216 T 15 15
15 Bulgaria 27217 G 15 15
16 Bulgaria 27218 A 15 15
17 Bulgaria 27219 C 15 15
18 Bulgaria 27220 T 15 15
19 Bulgaria 27221 T 15 15
20 Bulgaria 27222 T 15 15
21 Bulgaria 27223 C 15 15
22 Bulgaria 27224 A 15 15
23 Bulgaria 27225 G 15 15
24 Bulgaria 27226 G 15 15
25 Bulgaria 27227 T 15 15
26 Bulgaria 27228 T 15 15
27 Bulgaria 27229 A 15 15
28 Bulgaria 27230 C 15 15
29 Bulgaria 27231 T 15 15
30 Bulgaria 27232 A 15 15
31 Bulgaria 27233 T 15 15
32 Bulgaria 27234 A 15 15
33 Bulgaria 27235 G 15 15
34 Bulgaria 27236 C 15 15
35 Bulgaria 27237 A 15 15
36 Bulgaria 27238 G 15 15
37 Bulgaria 27239 A 15 15
38 Bulgaria 27240 G 15 15
39 Bulgaria 27241 A 15 15
40 Bulgaria 27242 T 15 15
41 Bulgaria 27243 A 15 15
42 Bulgaria 27244 T 15 15
43 Bulgaria 27245 T 15 15
44 Bulgaria 27246 A 15 15
45 Bulgaria 27247 C 15 15
46 Bulgaria 27248 T 15 15
47 Bulgaria 27249 A 15 15
48 Bulgaria 27250 A 15 15
49 Bulgaria 27251 T 15 15
50 Bulgaria 27252 T 15 15
51 Bulgaria 27253 A 15 15
52 Bulgaria 27254 T 15 15
53 Bulgaria 27255 T 15 15
54 Bulgaria 27256 A 15 15
55 Bulgaria 27257 T 15 15
56 Bulgaria 27258 G 15 15
57 Bulgaria 27259 A 15 15
58 Bulgaria 27260 G 15 15
59 Bulgaria 27261 G 15 15
60 Bulgaria 27262 A 15 15
61 Bulgaria 27263 C 15 15
62 Bulgaria 27264 T 15 15
63 Bulgaria 27265 T 15 15
64 Bulgaria 27266 T 15 15
65 Bulgaria 27267 T 15 15
66 Bulgaria 27268 A 15 15
67 Bulgaria 27269 A 15 15
68 Bulgaria 27270 A 15 15
69 Bulgaria 27271 G 15 15
70 Bulgaria 27272 T 15 15
71 Bulgaria 27273 T 15 15
72 Bulgaria 27274 T 15 15
73 Bulgaria 27275 C 15 15
74 Bulgaria 27276 C 15 15
75 Bulgaria 27277 A 15 15
76 Bulgaria 27278 T 15 15
77 Bulgaria 27279 T 15 15
78 Bulgaria 27280 T 15 15
79 Bulgaria 27281 G 15 15
80 Bulgaria 27282 G 15 15
81 Bulgaria 27283 A 15 15
82 Bulgaria 27284 A 15 15
83 Bulgaria 27285 T 15 15
84 Bulgaria 27286 C 15 15
85 Bulgaria 27287 T 15 15
86 Bulgaria 27288 T 15 15
87 Bulgaria 27289 G 15 15
88 Bulgaria 27290 A 15 15
89 Bulgaria 27291 T 15 15
90 Bulgaria 27292 T 15 15
91 Bulgaria 27293 A 15 15
92 Bulgaria 27294 C 15 15
93 Bulgaria 27295 A 15 15
94 Bulgaria 27296 T 15 15
95 Bulgaria 27297 C 15 15
96 Bulgaria 27298 A 15 15
97 Bulgaria 27299 T 15 15
98 Bulgaria 27300 A 15 15
99 Bulgaria 27301 A 15 15
100 Bulgaria 27302 A 15 15
101 Bulgaria 27303 C 15 15
102 Bulgaria 27304 C 15 15
103 Bulgaria 27305 T 15 15
104 Bulgaria 27306 C 15 15
105 Bulgaria 27307 A 15 15
106 Bulgaria 27308 T 15 15
107 Bulgaria 27309 A 15 15
108 Bulgaria 27310 A 15 15
109 Bulgaria 27311 T 15 15
110 Bulgaria 27312 T 15 15
111 Bulgaria 27313 A 15 15
112 Bulgaria 27314 A 15 15
113 Bulgaria 27315 A 15 15
114 Bulgaria 27316 A 15 15
115 Bulgaria 27317 A 15 15
116 Bulgaria 27318 T 15 15
117 Bulgaria 27319 T 15 15
118 Bulgaria 27320 T 15 15
119 Bulgaria 27321 A 15 15
120 Bulgaria 27322 T 15 15
121 Bulgaria 27323 C 15 15
122 Bulgaria 27324 T 15 15
123 Bulgaria 27325 A 15 15
124 Bulgaria 27326 A 15 15
125 Bulgaria 27327 G 15 15
126 Bulgaria 27328 T 15 15
127 Bulgaria 27329 C 15 15
128 Bulgaria 27330 A 15 15
129 Bulgaria 27331 C 15 15
130 Bulgaria 27332 T 15 15
131 Bulgaria 27333 A 15 15
132 Bulgaria 27334 A 15 15
133 Bulgaria 27335 C 15 15
134 Bulgaria 27336 T 15 15
135 Bulgaria 27337 G 15 15
136 Bulgaria 27338 A 15 15
137 Bulgaria 27339 G 15 15
138 Bulgaria 27340 A 15 15
139 Bulgaria 27341 A 15 15
140 Bulgaria 27342 T 15 15
141 Bulgaria 27343 A 15 15
142 Bulgaria 27344 A 15 15
143 Bulgaria 27345 A 15 15
144 Bulgaria 27346 T 15 15
145 Bulgaria 27347 A 15 15
146 Bulgaria 27348 T 15 15
147 Bulgaria 27349 T 15 15
148 Bulgaria 27350 C 15 15
149 Bulgaria 27351 T 15 15
150 Bulgaria 27352 C 15 15
151 Bulgaria 27353 A 15 15
152 Bulgaria 27354 A 15 15
153 Bulgaria 27355 T 15 15
154 Bulgaria 27356 T 15 15
155 Bulgaria 27357 A 15 15
156 Bulgaria 27358 G 15 15
157 Bulgaria 27359 A 15 15
158 Bulgaria 27360 T 15 15
159 Bulgaria 27361 G 15 15
160 Bulgaria 27362 A 15 15
161 Bulgaria 27363 A 15 15
162 Bulgaria 27364 G 15 15
163 Bulgaria 27365 A 15 15
164 Bulgaria 27366 G 15 15
165 Bulgaria 27367 C 15 15
166 Bulgaria 27368 A 15 15
167 Bulgaria 27369 A 15 15
168 Bulgaria 27370 C 15 15
169 Bulgaria 27371 C 15 15
170 Bulgaria 27372 A 15 15
171 Bulgaria 27373 A 15 15
172 Bulgaria 27374 T 15 15
173 Bulgaria 27375 G 15 15
174 Bulgaria 27376 G 15 15
175 Bulgaria 27377 A 15 15
176 Bulgaria 27378 G 15 15
177 Bulgaria 27379 A 15 15
178 Bulgaria 27380 T 15 15
179 Bulgaria 27381 T 15 15
180 Bulgaria 27382 G 15 15
181 Bulgaria 27383 A 15 15
182 Bulgaria 27384 T 15 15
183 Bulgaria 27385 T 15 15
184 Bulgaria 27386 A 15 15
185 Bulgaria 27387 A 15 15