National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Botswana 27202 A 13 13
1 Botswana 27203 T 13 13
2 Botswana 27204 G 13 13
3 Botswana 27205 T 13 13
4 Botswana 27206 T 13 13
5 Botswana 27207 T 13 13
6 Botswana 27208 C 13 13
7 Botswana 27209 A 13 13
8 Botswana 27210 T 13 13
9 Botswana 27211 C 13 13
10 Botswana 27212 T 13 13
11 Botswana 27213 C 13 13
12 Botswana 27214 G 13 13
13 Botswana 27215 T 13 13
14 Botswana 27216 T 13 13
15 Botswana 27217 G 13 13
16 Botswana 27218 A 13 13
17 Botswana 27219 C 13 13
18 Botswana 27220 T 13 13
19 Botswana 27221 T 13 13
20 Botswana 27222 T 13 13
21 Botswana 27223 C 13 13
22 Botswana 27224 A 13 13
23 Botswana 27225 G 13 13
24 Botswana 27226 G 13 13
25 Botswana 27227 T 13 13
26 Botswana 27228 T 13 13
27 Botswana 27229 A 13 13
28 Botswana 27230 C 13 13
29 Botswana 27231 T 13 13
30 Botswana 27232 A 13 13
31 Botswana 27233 T 13 13
32 Botswana 27234 A 13 13
33 Botswana 27235 G 13 13
34 Botswana 27236 C 13 13
35 Botswana 27237 A 13 13
36 Botswana 27238 G 13 13
37 Botswana 27239 A 13 13
38 Botswana 27240 G 13 13
39 Botswana 27241 A 13 13
40 Botswana 27242 T 13 13
41 Botswana 27243 A 13 13
42 Botswana 27244 T 13 13
43 Botswana 27245 T 13 13
44 Botswana 27246 A 13 13
45 Botswana 27247 C 13 13
46 Botswana 27248 T 13 13
47 Botswana 27249 A 13 13
48 Botswana 27250 A 13 13
49 Botswana 27251 T 13 13
50 Botswana 27252 T 13 13
51 Botswana 27253 A 13 13
52 Botswana 27254 T 13 13
53 Botswana 27255 T 13 13
54 Botswana 27256 A 13 13
55 Botswana 27257 T 13 13
56 Botswana 27258 G 13 13
57 Botswana 27259 A 13 13
58 Botswana 27260 G 13 13
59 Botswana 27261 G 13 13
60 Botswana 27262 A 13 13
61 Botswana 27263 C 13 13
62 Botswana 27264 T 13 13
63 Botswana 27265 T 13 13
64 Botswana 27266 T 13 13
65 Botswana 27267 T 13 13
66 Botswana 27268 A 13 13
67 Botswana 27269 A 13 13
68 Botswana 27270 A 13 13
69 Botswana 27271 G 13 13
70 Botswana 27272 T 13 13
71 Botswana 27273 T 13 13
72 Botswana 27274 T 13 13
73 Botswana 27275 C 13 13
74 Botswana 27276 C 13 13
75 Botswana 27277 A 13 13
76 Botswana 27278 T 13 13
77 Botswana 27279 T 13 13
78 Botswana 27280 T 13 13
79 Botswana 27281 G 13 13
80 Botswana 27282 G 13 13
81 Botswana 27283 A 13 13
82 Botswana 27284 A 13 13
83 Botswana 27285 T 13 13
84 Botswana 27286 C 13 13
85 Botswana 27287 T 13 13
86 Botswana 27288 T 13 13
87 Botswana 27289 G 13 13
88 Botswana 27290 A 13 13
89 Botswana 27291 T 13 13
90 Botswana 27292 T 13 13
91 Botswana 27293 A 13 13
92 Botswana 27294 C 13 13
93 Botswana 27295 A 13 13
94 Botswana 27296 T 13 13
95 Botswana 27297 C 13 13
96 Botswana 27298 A 13 13
97 Botswana 27299 T 13 13
98 Botswana 27300 A 13 13
99 Botswana 27301 A 13 13
100 Botswana 27302 A 13 13
101 Botswana 27303 C 13 13
102 Botswana 27304 C 13 13
103 Botswana 27305 T 13 13
104 Botswana 27306 C 13 13
105 Botswana 27307 A 13 13
106 Botswana 27308 T 13 13
107 Botswana 27309 A 13 13
108 Botswana 27310 A 13 13
109 Botswana 27311 T 13 13
110 Botswana 27312 T 13 13
111 Botswana 27313 A 13 13
112 Botswana 27314 A 13 13
113 Botswana 27315 A 13 13
114 Botswana 27316 A 13 13
115 Botswana 27317 A 13 13
116 Botswana 27318 T 13 13
117 Botswana 27319 T 13 13
118 Botswana 27320 T 13 13
119 Botswana 27321 A 13 13
120 Botswana 27322 T 13 13
121 Botswana 27323 C 13 13
122 Botswana 27324 T 13 13
123 Botswana 27325 A 13 13
124 Botswana 27326 A 13 13
125 Botswana 27327 G 13 13
126 Botswana 27328 T 13 13
127 Botswana 27329 C 13 13
128 Botswana 27330 A 13 13
129 Botswana 27331 C 13 13
130 Botswana 27332 T 13 13
131 Botswana 27333 A 13 13
132 Botswana 27334 A 13 13
133 Botswana 27335 C 13 13
134 Botswana 27336 T 13 13
135 Botswana 27337 G 13 13
136 Botswana 27338 A 13 13
137 Botswana 27339 G 13 13
138 Botswana 27340 A 13 13
139 Botswana 27341 A 13 13
140 Botswana 27342 T 13 13
141 Botswana 27343 A 13 13
142 Botswana 27344 A 13 13
143 Botswana 27345 A 13 13
144 Botswana 27346 T 13 13
145 Botswana 27347 A 13 13
146 Botswana 27348 T 13 13
147 Botswana 27349 T 13 13
148 Botswana 27350 C 13 13
149 Botswana 27351 T 13 13
150 Botswana 27352 C 13 13
151 Botswana 27353 A 13 13
152 Botswana 27354 A 13 13
153 Botswana 27355 T 13 13
154 Botswana 27356 T 13 13
155 Botswana 27357 A 13 13
156 Botswana 27358 G 13 13
157 Botswana 27359 A 13 13
158 Botswana 27360 T 13 13
159 Botswana 27361 G 13 13
160 Botswana 27362 A 13 13
161 Botswana 27363 A 13 13
162 Botswana 27364 G 13 13
163 Botswana 27365 A 13 13
164 Botswana 27366 G 13 13
165 Botswana 27367 C 13 13
166 Botswana 27368 A 13 13
167 Botswana 27369 A 13 13
168 Botswana 27370 C 13 13
169 Botswana 27371 C 13 13
170 Botswana 27372 A 13 13
171 Botswana 27373 A 13 13
172 Botswana 27374 T 13 13
173 Botswana 27375 G 13 13
174 Botswana 27376 G 13 13
175 Botswana 27377 A 13 13
176 Botswana 27378 G 13 13
177 Botswana 27379 A 13 13
178 Botswana 27380 T 13 13
179 Botswana 27381 T 13 13
180 Botswana 27382 G 13 13
181 Botswana 27383 A 13 13
182 Botswana 27384 T 13 13
183 Botswana 27385 T 13 13
184 Botswana 27386 A 13 13
185 Botswana 27387 A 13 13