National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                             1      
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Bolivia 27202 A 27 27
1 Bolivia 27203 T 27 27
2 Bolivia 27204 G 27 27
3 Bolivia 27205 T 27 27
4 Bolivia 27206 T 27 27
5 Bolivia 27207 T 27 27
6 Bolivia 27208 C 27 27
7 Bolivia 27209 A 27 27
8 Bolivia 27210 T 27 27
9 Bolivia 27211 C 27 27
10 Bolivia 27212 T 27 27
11 Bolivia 27213 C 27 27
12 Bolivia 27214 G 27 27
13 Bolivia 27215 T 27 27
14 Bolivia 27216 T 27 27
15 Bolivia 27217 G 27 27
16 Bolivia 27218 A 27 27
17 Bolivia 27219 C 27 27
18 Bolivia 27220 T 27 27
19 Bolivia 27221 T 27 27
20 Bolivia 27222 T 27 27
21 Bolivia 27223 C 27 27
22 Bolivia 27224 A 27 27
23 Bolivia 27225 G 27 27
24 Bolivia 27226 G 27 27
25 Bolivia 27227 T 27 27
26 Bolivia 27228 T 27 27
27 Bolivia 27229 A 27 27
28 Bolivia 27230 C 27 27
29 Bolivia 27231 T 27 27
30 Bolivia 27232 A 27 27
31 Bolivia 27233 T 27 27
32 Bolivia 27234 A 27 27
33 Bolivia 27235 G 27 27
34 Bolivia 27236 C 27 27
35 Bolivia 27237 A 27 27
36 Bolivia 27238 G 27 27
37 Bolivia 27239 A 27 27
38 Bolivia 27240 G 27 27
39 Bolivia 27241 A 27 27
40 Bolivia 27242 T 27 27
41 Bolivia 27243 A 27 27
42 Bolivia 27244 T 27 27
43 Bolivia 27245 T 27 27
44 Bolivia 27246 A 27 27
45 Bolivia 27247 C 27 27
46 Bolivia 27248 T 27 27
47 Bolivia 27249 A 27 27
48 Bolivia 27250 A 27 27
49 Bolivia 27251 T 27 27
50 Bolivia 27252 T 27 27
51 Bolivia 27253 A 27 27
52 Bolivia 27254 T 27 27
53 Bolivia 27255 T 27 27
54 Bolivia 27256 A 27 27
55 Bolivia 27257 T 27 27
56 Bolivia 27258 G 27 27
57 Bolivia 27259 A 27 27
58 Bolivia 27260 G 27 27
59 Bolivia 27261 G 27 27
60 Bolivia 27262 A 27 27
61 Bolivia 27263 C 27 27
62 Bolivia 27264 T 27 27
63 Bolivia 27265 T 27 27
64 Bolivia 27266 T 27 27
65 Bolivia 27267 T 27 27
66 Bolivia 27268 A 27 27
67 Bolivia 27269 A 27 27
68 Bolivia 27270 A 27 27
69 Bolivia 27271 G 27 27
70 Bolivia 27272 T 27 27
71 Bolivia 27273 T 27 27
72 Bolivia 27274 T 27 27
73 Bolivia 27275 C 27 27
74 Bolivia 27276 C 27 27
75 Bolivia 27277 A 27 27
76 Bolivia 27278 T 27 27
77 Bolivia 27279 T 27 27
78 Bolivia 27280 T 27 27
79 Bolivia 27281 G 27 27
80 Bolivia 27282 G 27 27
81 Bolivia 27283 A 27 27
82 Bolivia 27284 A 27 27
83 Bolivia 27285 T 27 27
84 Bolivia 27286 C 27 27
85 Bolivia 27287 T 27 27
86 Bolivia 27288 T 27 27
87 Bolivia 27289 G 27 27
88 Bolivia 27290 A 27 27
89 Bolivia 27291 T 27 27
90 Bolivia 27292 T 27 27
91 Bolivia 27293 A 27 27
92 Bolivia 27294 C 27 27
93 Bolivia 27295 A 27 27
94 Bolivia 27296 T 27 27
95 Bolivia 27297 C 27 27
96 Bolivia 27298 A 27 27
97 Bolivia 27299 T C 27 25 Ile33Thr
98 Bolivia 27300 A 27 27
99 Bolivia 27301 A 27 27
100 Bolivia 27302 A 27 27
101 Bolivia 27303 C 27 27
102 Bolivia 27304 C 27 27
103 Bolivia 27305 T 27 27
104 Bolivia 27306 C 27 27
105 Bolivia 27307 A 27 27
106 Bolivia 27308 T 27 27
107 Bolivia 27309 A 27 27
108 Bolivia 27310 A 27 27
109 Bolivia 27311 T 27 27
110 Bolivia 27312 T 27 27
111 Bolivia 27313 A 27 27
112 Bolivia 27314 A 27 27
113 Bolivia 27315 A 27 27
114 Bolivia 27316 A 27 27
115 Bolivia 27317 A 27 27
116 Bolivia 27318 T 27 27
117 Bolivia 27319 T 27 27
118 Bolivia 27320 T 27 27
119 Bolivia 27321 A 27 27
120 Bolivia 27322 T 27 27
121 Bolivia 27323 C 27 27
122 Bolivia 27324 T 27 27
123 Bolivia 27325 A 27 27
124 Bolivia 27326 A 27 27
125 Bolivia 27327 G 27 27
126 Bolivia 27328 T 27 27
127 Bolivia 27329 C 27 27
128 Bolivia 27330 A 27 27
129 Bolivia 27331 C 27 27
130 Bolivia 27332 T 27 27
131 Bolivia 27333 A 27 27
132 Bolivia 27334 A 27 27
133 Bolivia 27335 C 27 27
134 Bolivia 27336 T 27 27
135 Bolivia 27337 G 27 27
136 Bolivia 27338 A 27 27
137 Bolivia 27339 G 27 27
138 Bolivia 27340 A 27 27
139 Bolivia 27341 A 27 27
140 Bolivia 27342 T 27 27
141 Bolivia 27343 A 27 27
142 Bolivia 27344 A 27 27
143 Bolivia 27345 A 27 27
144 Bolivia 27346 T 27 27
145 Bolivia 27347 A 27 27
146 Bolivia 27348 T 27 27
147 Bolivia 27349 T 27 27
148 Bolivia 27350 C 27 27
149 Bolivia 27351 T 27 27
150 Bolivia 27352 C 27 27
151 Bolivia 27353 A 27 27
152 Bolivia 27354 A 27 27
153 Bolivia 27355 T 27 27
154 Bolivia 27356 T 27 27
155 Bolivia 27357 A 27 27
156 Bolivia 27358 G 27 27
157 Bolivia 27359 A 27 27
158 Bolivia 27360 T 27 27
159 Bolivia 27361 G 27 27
160 Bolivia 27362 A 27 27
161 Bolivia 27363 A 27 27
162 Bolivia 27364 G 27 27
163 Bolivia 27365 A 27 27
164 Bolivia 27366 G 27 27
165 Bolivia 27367 C 27 27
166 Bolivia 27368 A 27 27
167 Bolivia 27369 A 27 27
168 Bolivia 27370 C 27 27
169 Bolivia 27371 C 27 27
170 Bolivia 27372 A 27 27
171 Bolivia 27373 A 27 27
172 Bolivia 27374 T 27 27
173 Bolivia 27375 G 27 27
174 Bolivia 27376 G 27 27
175 Bolivia 27377 A 27 27
176 Bolivia 27378 G 27 27
177 Bolivia 27379 A 27 27
178 Bolivia 27380 T 27 27
179 Bolivia 27381 T 27 27
180 Bolivia 27382 G 27 27
181 Bolivia 27383 A 27 27
182 Bolivia 27384 T 27 27
183 Bolivia 27385 T 27 27
184 Bolivia 27386 A 27 27
185 Bolivia 27387 A 27 27