National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F H I K L M N P Q R S T V W Y
*     2                                      
-     186                                      
?                                            
A     3                                      
C                                            
D     12     1               1               1
E     16     1                                
F     9         2       1                    
H     3                                      
I     30                     1           1    
K     12                                      
L     24                 2                    
M     9                               1      
N     12                     3       1        
P     3                 1                    
Q     9                                      
R     3                                      
S     12                             1        
T     9             1                        
V     9                                 1    
W     3                 1                    
Y     6   1                                 1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Belgium 27202 A 3690 3690
1 Belgium 27203 T 3690 3690
2 Belgium 27204 G 3690 3690
3 Belgium 27205 T 3690 3690
4 Belgium 27206 T 3690 3690
5 Belgium 27207 T C 3690 3689 Phe2Phe
6 Belgium 27208 C 3690 3690
7 Belgium 27209 A 3690 3690
8 Belgium 27210 T 3690 3690
9 Belgium 27211 C 3690 3690
10 Belgium 27212 T 3690 3690
11 Belgium 27213 C T 3690 3683 Leu4Leu
12 Belgium 27214 G 3690 3690
13 Belgium 27215 T 3690 3690
14 Belgium 27216 T 3690 3690
15 Belgium 27217 G 3690 3690
16 Belgium 27218 A 3690 3690
17 Belgium 27219 C 3690 3690
18 Belgium 27220 T C 3690 3687 Phe7Leu
19 Belgium 27221 T 3690 3690
20 Belgium 27222 T C 3690 3687 Phe7Phe
21 Belgium 27223 C 3690 3690
22 Belgium 27224 A 3690 3690
23 Belgium 27225 G 3690 3690
24 Belgium 27226 G 3690 3690
25 Belgium 27227 T 3690 3690
26 Belgium 27228 T C 3690 3689 Val9Val
27 Belgium 27229 A 3690 3690
28 Belgium 27230 C 3690 3690
29 Belgium 27231 T 3690 3690
30 Belgium 27232 A 3690 3690
31 Belgium 27233 T 3690 3690
32 Belgium 27234 A 3690 3690
33 Belgium 27235 G 3690 3690
34 Belgium 27236 C 3690 3690
35 Belgium 27237 A 3690 3690
36 Belgium 27238 G 3690 3690
37 Belgium 27239 A 3690 3690
38 Belgium 27240 G T 3690 3688 Glu13Asp
39 Belgium 27241 A 3690 3690
40 Belgium 27242 T 3690 3690
41 Belgium 27243 A 3690 3690
42 Belgium 27244 T 3690 3690
43 Belgium 27245 T 3690 3690
44 Belgium 27246 A 3690 3690
45 Belgium 27247 C 3690 3690
46 Belgium 27248 T 3690 3690
47 Belgium 27249 A 3690 3690
48 Belgium 27250 A 3689 3689
49 Belgium 27251 T 3689 3689
50 Belgium 27252 T 3689 3689
51 Belgium 27253 A G 3689 3688 Ile18Val
52 Belgium 27254 T 3689 3689
53 Belgium 27255 T 3689 3689
54 Belgium 27256 A 3689 3689
55 Belgium 27257 T 3689 3689
56 Belgium 27258 G 3689 3689
57 Belgium 27259 A 3689 3689
58 Belgium 27260 G 3689 3689
59 Belgium 27261 G 3689 3689
60 Belgium 27262 A 3688 3688
61 Belgium 27263 C T 3688 3684 Thr21Ile
62 Belgium 27264 T 3688 3688
63 Belgium 27265 T 3688 3688
64 Belgium 27266 T 3688 3688
65 Belgium 27267 T 3688 3688
66 Belgium 27268 A 3688 3688
67 Belgium 27269 A 3688 3688
68 Belgium 27270 A 3688 3688
69 Belgium 27271 G 3688 3688
70 Belgium 27272 T 3688 3688
71 Belgium 27273 T 3688 3688
72 Belgium 27274 T 3688 3688
73 Belgium 27275 C 3688 3688
74 Belgium 27276 C A 3688 3685 Ser25Ser
75 Belgium 27277 A 3688 3688
76 Belgium 27278 T 3688 3688
77 Belgium 27279 T 3688 3688
78 Belgium 27280 T 3688 3688
79 Belgium 27281 G T 3688 3687 Trp27Leu
80 Belgium 27282 G 3688 3688
81 Belgium 27283 A 3688 3688
82 Belgium 27284 A 3688 3688
83 Belgium 27285 T 3688 3688
84 Belgium 27286 C 3688 3688
85 Belgium 27287 T 3688 3688
86 Belgium 27288 T 3688 3688
87 Belgium 27289 G A 3688 3687 Asp30Asn
88 Belgium 27290 A 3688 3688
89 Belgium 27291 T 3688 3688
90 Belgium 27292 T 3688 3688
91 Belgium 27293 A 3688 3688
92 Belgium 27294 C T 3688 3686 Tyr31Tyr
93 Belgium 27295 A 3688 3688
94 Belgium 27296 T A 3688 3687 Ile32Asn
95 Belgium 27297 C 3688 3688
96 Belgium 27298 A 3688 3688
97 Belgium 27299 T 3688 3688
98 Belgium 27300 A 3688 3688
99 Belgium 27301 A 3688 3688
100 Belgium 27302 A 3688 3688
101 Belgium 27303 C T 3688 3687 Asn34Asn
102 Belgium 27304 C 3688 3688
103 Belgium 27305 T 3688 3688
104 Belgium 27306 C 3688 3688
105 Belgium 27307 A 3688 3688
106 Belgium 27308 T 3688 3688
107 Belgium 27309 A 3688 3688
108 Belgium 27310 A 3688 3688
109 Belgium 27311 T 3688 3688
110 Belgium 27312 T 3688 3688
111 Belgium 27313 A 3688 3688
112 Belgium 27314 A 3688 3688
113 Belgium 27315 A 3688 3688
114 Belgium 27316 A 3688 3688
115 Belgium 27317 A G 3688 3686 Asn39Ser
116 Belgium 27318 T C 3688 3686 Asn39Asn
117 Belgium 27319 T C 3688 3676 Leu40Leu
118 Belgium 27320 T 3688 3688
119 Belgium 27321 A 3688 3688
120 Belgium 27322 T 3689 3689
121 Belgium 27323 C 3689 3689
122 Belgium 27324 T 3689 3689
123 Belgium 27325 A 3689 3689
124 Belgium 27326 A 3689 3689
125 Belgium 27327 G 3689 3689
126 Belgium 27328 T 3689 3689
127 Belgium 27329 C 3689 3689
128 Belgium 27330 A 3689 3689
129 Belgium 27331 C 3689 3689
130 Belgium 27332 T 3689 3689
131 Belgium 27333 A 3689 3689
132 Belgium 27334 A 3689 3689
133 Belgium 27335 C 3689 3689
134 Belgium 27336 T 3689 3689
135 Belgium 27337 G 3689 3689
136 Belgium 27338 A 3689 3689
137 Belgium 27339 G 3689 3689
138 Belgium 27340 A 3689 3689
139 Belgium 27341 A 3689 3689
140 Belgium 27342 T C 3689 3684 Asn47Asn
141 Belgium 27343 A 3689 3689
142 Belgium 27344 A 3689 3689
143 Belgium 27345 A 3689 3689
144 Belgium 27346 T 3689 3689
145 Belgium 27347 A G 3689 3688 Tyr49Cys
146 Belgium 27348 T 3689 3689
147 Belgium 27349 T 3689 3689
148 Belgium 27350 C 3689 3689
149 Belgium 27351 T 3689 3689
150 Belgium 27352 C 3689 3689
151 Belgium 27353 A 3689 3689
152 Belgium 27354 A 3689 3689
153 Belgium 27355 T 3689 3689
154 Belgium 27356 T 3689 3689
155 Belgium 27357 A 3689 3689
156 Belgium 27358 G T 3689 3688 Asp53Tyr
157 Belgium 27359 A 3689 3689
158 Belgium 27360 T 3689 3689
159 Belgium 27361 G 3689 3689
160 Belgium 27362 A 3689 3689
161 Belgium 27363 A 3689 3689
162 Belgium 27364 G 3689 3689
163 Belgium 27365 A 3689 3689
164 Belgium 27366 G 3689 3689
165 Belgium 27367 C 3689 3689
166 Belgium 27368 A 3689 3689
167 Belgium 27369 A 3689 3689
168 Belgium 27370 C 3689 3689
169 Belgium 27371 C T 3689 3688 Pro57Leu
170 Belgium 27372 A 3689 3689
171 Belgium 27373 A 3689 3689
172 Belgium 27374 T C 3689 3688 Met58Thr
173 Belgium 27375 G 3689 3689
174 Belgium 27376 G 3689 3689
175 Belgium 27377 A 3689 3689
176 Belgium 27378 G 3689 3689
177 Belgium 27379 A 3689 3689
178 Belgium 27380 T 3689 3689
179 Belgium 27381 T 3689 3689
180 Belgium 27382 G 3684 3684
181 Belgium 27383 A 3684 3684
182 Belgium 27384 T C 3684 3654 Asp61Asp
183 Belgium 27385 T 3684 3684
184 Belgium 27386 A 3684 3684
185 Belgium 27387 A 3684 3684