National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F G H I K L M N P Q R S T V W Y
*     2                                      
-     186                                      
?                                            
A     3                                      
D     12   1                                  
E     16   1     1                            
F     9                 1                    
G                                            
H     3                                      
I     30                               1 1    
K     12                     1                
L     24                 1                    
M     9                                      
N     12                                     1
P     3                                      
Q     9                                      
R     3                                      
S     12       1                              
T     9             1                        
V     9       1                              
W     3                 1                    
Y     6                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Bangladesh 27202 A 667 667
1 Bangladesh 27203 T 667 667
2 Bangladesh 27204 G 667 667
3 Bangladesh 27205 T C 667 666 Phe2Leu
4 Bangladesh 27206 T 667 667
5 Bangladesh 27207 T 667 667
6 Bangladesh 27208 C 667 667
7 Bangladesh 27209 A 667 667
8 Bangladesh 27210 T 667 667
9 Bangladesh 27211 C 667 667
10 Bangladesh 27212 T 667 667
11 Bangladesh 27213 C T 667 665 Leu4Leu
12 Bangladesh 27214 G T 667 666 Val5Phe
13 Bangladesh 27215 T 667 667
14 Bangladesh 27216 T 667 667
15 Bangladesh 27217 G 667 667
16 Bangladesh 27218 A 667 667
17 Bangladesh 27219 C 667 667
18 Bangladesh 27220 T 667 667
19 Bangladesh 27221 T 667 667
20 Bangladesh 27222 T 667 667
21 Bangladesh 27223 C 667 667
22 Bangladesh 27224 A 667 667
23 Bangladesh 27225 G 668 668
24 Bangladesh 27226 G 668 668
25 Bangladesh 27227 T 668 668
26 Bangladesh 27228 T 668 668
27 Bangladesh 27229 A 668 668
28 Bangladesh 27230 C 668 668
29 Bangladesh 27231 T 668 668
30 Bangladesh 27232 A 668 668
31 Bangladesh 27233 T C 668 667 Ile11Thr
32 Bangladesh 27234 A 668 668
33 Bangladesh 27235 G 668 668
34 Bangladesh 27236 C 668 668
35 Bangladesh 27237 A 668 668
36 Bangladesh 27238 G 668 668
37 Bangladesh 27239 A 668 668
38 Bangladesh 27240 G T 668 666 Glu13Asp
39 Bangladesh 27241 A 668 668
40 Bangladesh 27242 T 668 668
41 Bangladesh 27243 A 668 668
42 Bangladesh 27244 T 668 667
43 Bangladesh 27245 T 668 667
44 Bangladesh 27246 A 668 667
45 Bangladesh 27247 C 668 667
46 Bangladesh 27248 T 668 667
47 Bangladesh 27249 A 668 667
48 Bangladesh 27250 A 668 667
49 Bangladesh 27251 T 668 667
50 Bangladesh 27252 T 668 667
51 Bangladesh 27253 A 668 667
52 Bangladesh 27254 T 668 667
53 Bangladesh 27255 T 668 667
54 Bangladesh 27256 A 668 667
55 Bangladesh 27257 T 668 667
56 Bangladesh 27258 G 668 667
57 Bangladesh 27259 A 668 667
58 Bangladesh 27260 G 668 667
59 Bangladesh 27261 G 668 667
60 Bangladesh 27262 A 667 666
61 Bangladesh 27263 C T 667 665 Thr21Ile
62 Bangladesh 27264 T 667 666
63 Bangladesh 27265 T 667 666
64 Bangladesh 27266 T 667 666
65 Bangladesh 27267 T 667 666
66 Bangladesh 27268 A 667 666
67 Bangladesh 27269 A 667 666
68 Bangladesh 27270 A 667 666
69 Bangladesh 27271 G 667 666
70 Bangladesh 27272 T 667 666
71 Bangladesh 27273 T 667 665
72 Bangladesh 27274 T 667 666
73 Bangladesh 27275 C T 667 666 Ser25Phe
74 Bangladesh 27276 C 667 667
75 Bangladesh 27277 A 667 667
76 Bangladesh 27278 T 667 667
77 Bangladesh 27279 T 667 667
78 Bangladesh 27280 T 667 667
79 Bangladesh 27281 G T 667 665 Trp27Leu
80 Bangladesh 27282 G 667 667
81 Bangladesh 27283 A 667 667
82 Bangladesh 27284 A 667 667
83 Bangladesh 27285 T 667 667
84 Bangladesh 27286 C 667 667
85 Bangladesh 27287 T 667 667
86 Bangladesh 27288 T 667 667
87 Bangladesh 27289 G 667 667
88 Bangladesh 27290 A 667 667
89 Bangladesh 27291 T 667 667
90 Bangladesh 27292 T 667 667
91 Bangladesh 27293 A 667 667
92 Bangladesh 27294 C 667 667
93 Bangladesh 27295 A 667 667
94 Bangladesh 27296 T 668 668
95 Bangladesh 27297 C 668 668
96 Bangladesh 27298 A 668 668
97 Bangladesh 27299 T 668 668
98 Bangladesh 27300 A 668 668
99 Bangladesh 27301 A 668 668
100 Bangladesh 27302 A 668 666
101 Bangladesh 27303 C 669 669
102 Bangladesh 27304 C 669 669
103 Bangladesh 27305 T 669 669
104 Bangladesh 27306 C 669 669
105 Bangladesh 27307 A 669 669
106 Bangladesh 27308 T 667 667
107 Bangladesh 27309 A 667 667
108 Bangladesh 27310 A 667 666
109 Bangladesh 27311 T 667 666
110 Bangladesh 27312 T 667 667
111 Bangladesh 27313 A 667 667
112 Bangladesh 27314 A 667 667
113 Bangladesh 27315 A 667 667
114 Bangladesh 27316 A T 667 666 Asn39Tyr
115 Bangladesh 27317 A 667 667
116 Bangladesh 27318 T 667 667
117 Bangladesh 27319 T 667 667
118 Bangladesh 27320 T 667 667
119 Bangladesh 27321 A 667 667
120 Bangladesh 27322 T 668 668
121 Bangladesh 27323 C 668 668
122 Bangladesh 27324 T 668 668
123 Bangladesh 27325 A 668 668
124 Bangladesh 27326 A 668 668
125 Bangladesh 27327 G T 668 666 Lys42Asn
126 Bangladesh 27328 T 668 668
127 Bangladesh 27329 C 668 668
128 Bangladesh 27330 A 668 668
129 Bangladesh 27331 C 668 667
130 Bangladesh 27332 T 668 667
131 Bangladesh 27333 A 668 667
132 Bangladesh 27334 A 668 667
133 Bangladesh 27335 C 668 667
134 Bangladesh 27336 T 668 667
135 Bangladesh 27337 G 668 667
136 Bangladesh 27338 A 668 667
137 Bangladesh 27339 G 668 667
138 Bangladesh 27340 A 668 667
139 Bangladesh 27341 A 668 667
140 Bangladesh 27342 T 668 667
141 Bangladesh 27343 A 668 667
142 Bangladesh 27344 A 668 667
143 Bangladesh 27345 A 668 667
144 Bangladesh 27346 T 668 667
145 Bangladesh 27347 A 668 667
146 Bangladesh 27348 T 668 667
147 Bangladesh 27349 T 668 667
148 Bangladesh 27350 C 668 667
149 Bangladesh 27351 T 667 666
150 Bangladesh 27352 C 667 667
151 Bangladesh 27353 A 667 667
152 Bangladesh 27354 A 667 667
153 Bangladesh 27355 T 667 667
154 Bangladesh 27356 T 667 667
155 Bangladesh 27357 A 667 667
156 Bangladesh 27358 G 667 667
157 Bangladesh 27359 A 667 667
158 Bangladesh 27360 T 667 667
159 Bangladesh 27361 G 667 667
160 Bangladesh 27362 A 667 667
161 Bangladesh 27363 A 667 667
162 Bangladesh 27364 G 667 667
163 Bangladesh 27365 A G 667 665 Glu55Gly
164 Bangladesh 27366 G 667 667
165 Bangladesh 27367 C 667 667
166 Bangladesh 27368 A 667 667
167 Bangladesh 27369 A 667 666
168 Bangladesh 27370 C 667 666
169 Bangladesh 27371 C 667 666
170 Bangladesh 27372 A 667 666
171 Bangladesh 27373 A 667 666
172 Bangladesh 27374 T 667 666
173 Bangladesh 27375 G 667 666
174 Bangladesh 27376 G 667 667
175 Bangladesh 27377 A 667 667
176 Bangladesh 27378 G 667 667
177 Bangladesh 27379 A G 667 664 Ile60Val
178 Bangladesh 27380 T 667 667
179 Bangladesh 27381 T 667 667
180 Bangladesh 27382 G 667 667
181 Bangladesh 27383 A 667 667
182 Bangladesh 27384 T C 667 664 Asp61Asp
183 Bangladesh 27385 T 667 667
184 Bangladesh 27386 A 667 667
185 Bangladesh 27387 A 667 667