National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12   1 1                              
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Bahrain 27202 A 150 150
1 Bahrain 27203 T 150 150
2 Bahrain 27204 G 150 150
3 Bahrain 27205 T 150 150
4 Bahrain 27206 T 150 150
5 Bahrain 27207 T 150 150
6 Bahrain 27208 C 150 150
7 Bahrain 27209 A 150 150
8 Bahrain 27210 T 150 150
9 Bahrain 27211 C 150 150
10 Bahrain 27212 T 150 150
11 Bahrain 27213 C 150 150
12 Bahrain 27214 G 150 150
13 Bahrain 27215 T 150 150
14 Bahrain 27216 T 150 150
15 Bahrain 27217 G 150 150
16 Bahrain 27218 A 150 150
17 Bahrain 27219 C 150 150
18 Bahrain 27220 T 150 150
19 Bahrain 27221 T 150 150
20 Bahrain 27222 T 150 150
21 Bahrain 27223 C 150 150
22 Bahrain 27224 A 150 150
23 Bahrain 27225 G 150 150
24 Bahrain 27226 G 150 150
25 Bahrain 27227 T 150 150
26 Bahrain 27228 T 150 150
27 Bahrain 27229 A 150 150
28 Bahrain 27230 C 150 150
29 Bahrain 27231 T 150 150
30 Bahrain 27232 A 150 150
31 Bahrain 27233 T 150 150
32 Bahrain 27234 A 150 150
33 Bahrain 27235 G 150 150
34 Bahrain 27236 C 150 150
35 Bahrain 27237 A 150 150
36 Bahrain 27238 G 150 150
37 Bahrain 27239 A 150 150
38 Bahrain 27240 G 150 150
39 Bahrain 27241 A 150 150
40 Bahrain 27242 T 150 150
41 Bahrain 27243 A 150 150
42 Bahrain 27244 T 150 150
43 Bahrain 27245 T 150 150
44 Bahrain 27246 A 150 150
45 Bahrain 27247 C 150 150
46 Bahrain 27248 T 150 150
47 Bahrain 27249 A 150 150
48 Bahrain 27250 A 150 150
49 Bahrain 27251 T 150 150
50 Bahrain 27252 T 150 150
51 Bahrain 27253 A 150 150
52 Bahrain 27254 T 150 150
53 Bahrain 27255 T 150 150
54 Bahrain 27256 A 150 150
55 Bahrain 27257 T 150 150
56 Bahrain 27258 G 150 150
57 Bahrain 27259 A 150 150
58 Bahrain 27260 G 150 150
59 Bahrain 27261 G 150 150
60 Bahrain 27262 A 150 150
61 Bahrain 27263 C 150 150
62 Bahrain 27264 T 150 150
63 Bahrain 27265 T 150 150
64 Bahrain 27266 T 150 150
65 Bahrain 27267 T 150 150
66 Bahrain 27268 A 150 150
67 Bahrain 27269 A 150 150
68 Bahrain 27270 A 150 150
69 Bahrain 27271 G 150 150
70 Bahrain 27272 T 150 150
71 Bahrain 27273 T 150 150
72 Bahrain 27274 T 150 150
73 Bahrain 27275 C 150 150
74 Bahrain 27276 C 150 150
75 Bahrain 27277 A 150 150
76 Bahrain 27278 T 150 150
77 Bahrain 27279 T 150 150
78 Bahrain 27280 T 150 150
79 Bahrain 27281 G 150 150
80 Bahrain 27282 G 150 150
81 Bahrain 27283 A 150 150
82 Bahrain 27284 A 150 150
83 Bahrain 27285 T 150 150
84 Bahrain 27286 C 150 150
85 Bahrain 27287 T 150 150
86 Bahrain 27288 T 150 150
87 Bahrain 27289 G 150 150
88 Bahrain 27290 A 150 150
89 Bahrain 27291 T 150 150
90 Bahrain 27292 T 150 150
91 Bahrain 27293 A 150 150
92 Bahrain 27294 C 150 149
93 Bahrain 27295 A 150 150
94 Bahrain 27296 T 150 150
95 Bahrain 27297 C 150 150
96 Bahrain 27298 A 150 150
97 Bahrain 27299 T 150 150
98 Bahrain 27300 A 150 150
99 Bahrain 27301 A 150 150
100 Bahrain 27302 A 150 150
101 Bahrain 27303 C 150 150
102 Bahrain 27304 C 150 150
103 Bahrain 27305 T 150 150
104 Bahrain 27306 C 150 150
105 Bahrain 27307 A 150 150
106 Bahrain 27308 T 150 150
107 Bahrain 27309 A 150 150
108 Bahrain 27310 A 150 150
109 Bahrain 27311 T 150 150
110 Bahrain 27312 T 150 150
111 Bahrain 27313 A 150 150
112 Bahrain 27314 A 150 150
113 Bahrain 27315 A 150 150
114 Bahrain 27316 A 150 150
115 Bahrain 27317 A 150 150
116 Bahrain 27318 T 150 150
117 Bahrain 27319 T 150 150
118 Bahrain 27320 T 150 150
119 Bahrain 27321 A 150 150
120 Bahrain 27322 T 150 150
121 Bahrain 27323 C 150 150
122 Bahrain 27324 T 150 150
123 Bahrain 27325 A 150 150
124 Bahrain 27326 A 150 150
125 Bahrain 27327 G 150 150
126 Bahrain 27328 T 150 150
127 Bahrain 27329 C 150 150
128 Bahrain 27330 A 150 150
129 Bahrain 27331 C 150 150
130 Bahrain 27332 T 150 150
131 Bahrain 27333 A 150 150
132 Bahrain 27334 A 150 150
133 Bahrain 27335 C 150 150
134 Bahrain 27336 T 150 150
135 Bahrain 27337 G 150 150
136 Bahrain 27338 A 150 150
137 Bahrain 27339 G 150 150
138 Bahrain 27340 A 150 150
139 Bahrain 27341 A 150 150
140 Bahrain 27342 T 150 150
141 Bahrain 27343 A 150 150
142 Bahrain 27344 A 150 150
143 Bahrain 27345 A 150 150
144 Bahrain 27346 T 150 150
145 Bahrain 27347 A 150 150
146 Bahrain 27348 T 150 150
147 Bahrain 27349 T 150 150
148 Bahrain 27350 C 150 150
149 Bahrain 27351 T 150 150
150 Bahrain 27352 C 150 150
151 Bahrain 27353 A 150 150
152 Bahrain 27354 A 150 150
153 Bahrain 27355 T 150 150
154 Bahrain 27356 T 150 150
155 Bahrain 27357 A 150 150
156 Bahrain 27358 G 150 150
157 Bahrain 27359 A 150 150
158 Bahrain 27360 T 150 150
159 Bahrain 27361 G 150 150
160 Bahrain 27362 A 150 150
161 Bahrain 27363 A 150 150
162 Bahrain 27364 G 150 150
163 Bahrain 27365 A 150 150
164 Bahrain 27366 G 150 150
165 Bahrain 27367 C 150 150
166 Bahrain 27368 A 150 150
167 Bahrain 27369 A 150 150
168 Bahrain 27370 C 150 150
169 Bahrain 27371 C 150 150
170 Bahrain 27372 A 150 150
171 Bahrain 27373 A 150 150
172 Bahrain 27374 T 150 150
173 Bahrain 27375 G 150 150
174 Bahrain 27376 G 150 150
175 Bahrain 27377 A 150 150
176 Bahrain 27378 G 150 150
177 Bahrain 27379 A 150 150
178 Bahrain 27380 T 150 150
179 Bahrain 27381 T 150 150
180 Bahrain 27382 G 146 146
181 Bahrain 27383 A 146 146
182 Bahrain 27384 T C,A 146 142 Asp61Glu-p.Asp61Asp
183 Bahrain 27385 T 146 146
184 Bahrain 27386 A 146 146
185 Bahrain 27387 A 146 146