National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12   1                                
E 1   16   1                                
F     9               1                    
H     3                                    
I     30           2                 1      
K     12             1                      
L     24               5                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                           1        
S     12                                    
T     9           1                        
V     9                               2    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Austria 27202 A 1341 1341
1 Austria 27203 T 1341 1341
2 Austria 27204 G 1341 1341
3 Austria 27205 T 1341 1340
4 Austria 27206 T 1341 1341
5 Austria 27207 T 1341 1341
6 Austria 27208 C 1341 1341
7 Austria 27209 A 1341 1341
8 Austria 27210 T 1341 1341
9 Austria 27211 C 1341 1341
10 Austria 27212 T 1341 1341
11 Austria 27213 C A 1341 1340 Leu4Leu
12 Austria 27214 G 1341 1341
13 Austria 27215 T 1341 1341
14 Austria 27216 T A 1341 1340 Val5Val
15 Austria 27217 G 1341 1341
16 Austria 27218 A 1341 1341
17 Austria 27219 C 1341 1341
18 Austria 27220 T C 1341 1340 Phe7Leu
19 Austria 27221 T 1341 1341
20 Austria 27222 T 1341 1341
21 Austria 27223 C 1341 1341
22 Austria 27224 A 1341 1341
23 Austria 27225 G 1341 1341
24 Austria 27226 G 1341 1341
25 Austria 27227 T 1341 1341
26 Austria 27228 T 1341 1341
27 Austria 27229 A 1341 1341
28 Austria 27230 C 1341 1341
29 Austria 27231 T 1341 1341
30 Austria 27232 A 1341 1341
31 Austria 27233 T 1341 1341
32 Austria 27234 A 1341 1341
33 Austria 27235 G 1341 1341
34 Austria 27236 C 1341 1341
35 Austria 27237 A 1341 1341
36 Austria 27238 G 1341 1341
37 Austria 27239 A 1341 1341
38 Austria 27240 G 1341 1341
39 Austria 27241 A 1341 1341
40 Austria 27242 T 1341 1341
41 Austria 27243 A 1341 1341
42 Austria 27244 T 1341 1341
43 Austria 27245 T 1341 1341
44 Austria 27246 A 1341 1341
45 Austria 27247 C T 1341 1340 Leu16Leu
46 Austria 27248 T 1341 1341
47 Austria 27249 A 1341 1341
48 Austria 27250 A 1341 1341
49 Austria 27251 T 1341 1341
50 Austria 27252 T 1341 1341
51 Austria 27253 A 1341 1341
52 Austria 27254 T 1341 1341
53 Austria 27255 T 1341 1341
54 Austria 27256 A 1341 1341
55 Austria 27257 T 1341 1341
56 Austria 27258 G 1341 1341
57 Austria 27259 A 1341 1341
58 Austria 27260 G 1341 1341
59 Austria 27261 G T 1341 1340 Arg20Ser
60 Austria 27262 A 1341 1341
61 Austria 27263 C T 1341 1339 Thr21Ile
62 Austria 27264 T 1341 1340
63 Austria 27265 T 1341 1340
64 Austria 27266 T 1341 1340
65 Austria 27267 T 1341 1341
66 Austria 27268 A 1341 1341
67 Austria 27269 A 1341 1341
68 Austria 27270 A 1341 1341
69 Austria 27271 G 1341 1341
70 Austria 27272 T 1341 1341
71 Austria 27273 T C 1341 1340 Val24Val
72 Austria 27274 T 1341 1341
73 Austria 27275 C 1341 1341
74 Austria 27276 C 1341 1341
75 Austria 27277 A 1341 1341
76 Austria 27278 T 1341 1341
77 Austria 27279 T C 1341 1334 Ile26Ile
78 Austria 27280 T 1341 1341
79 Austria 27281 G 1341 1341
80 Austria 27282 G 1341 1341
81 Austria 27283 A 1342 1342
82 Austria 27284 A 1342 1342
83 Austria 27285 T 1342 1342
84 Austria 27286 C 1342 1342
85 Austria 27287 T 1342 1342
86 Austria 27288 T C 1342 1341 Leu29Leu
87 Austria 27289 G 1342 1342
88 Austria 27290 A 1342 1342
89 Austria 27291 T 1342 1342
90 Austria 27292 T 1342 1342
91 Austria 27293 A 1342 1342
92 Austria 27294 C 1342 1342
93 Austria 27295 A 1342 1342
94 Austria 27296 T 1342 1342
95 Austria 27297 C T 1342 1339 Ile32Ile
96 Austria 27298 A 1342 1342
97 Austria 27299 T C 1342 1341 Ile33Thr
98 Austria 27300 A 1342 1342
99 Austria 27301 A 1342 1342
100 Austria 27302 A 1342 1342
101 Austria 27303 C 1342 1342
102 Austria 27304 C 1342 1342
103 Austria 27305 T 1342 1342
104 Austria 27306 C 1342 1342
105 Austria 27307 A 1342 1342
106 Austria 27308 T 1342 1342
107 Austria 27309 A 1342 1342
108 Austria 27310 A 1342 1342
109 Austria 27311 T 1342 1342
110 Austria 27312 T 1342 1342
111 Austria 27313 A 1342 1342
112 Austria 27314 A 1342 1342
113 Austria 27315 A 1342 1342
114 Austria 27316 A 1342 1342
115 Austria 27317 A 1342 1342
116 Austria 27318 T 1342 1342
117 Austria 27319 T C 1342 1328 Leu40Leu
118 Austria 27320 T 1342 1342
119 Austria 27321 A 1342 1342
120 Austria 27322 T 1342 1342
121 Austria 27323 C 1342 1342
122 Austria 27324 T 1342 1342
123 Austria 27325 A 1342 1342
124 Austria 27326 A 1342 1342
125 Austria 27327 G A 1342 1341 Lys42Lys
126 Austria 27328 T 1342 1342
127 Austria 27329 C 1342 1342
128 Austria 27330 A 1342 1342
129 Austria 27331 C T 1342 1341 Leu44Leu
130 Austria 27332 T 1342 1342
131 Austria 27333 A 1342 1342
132 Austria 27334 A 1342 1342
133 Austria 27335 C 1342 1342
134 Austria 27336 T 1342 1342
135 Austria 27337 G 1342 1342
136 Austria 27338 A 1342 1342
137 Austria 27339 G 1342 1342
138 Austria 27340 A 1342 1342
139 Austria 27341 A 1342 1342
140 Austria 27342 T 1342 1342
141 Austria 27343 A 1342 1342
142 Austria 27344 A 1342 1342
143 Austria 27345 A 1342 1341
144 Austria 27346 T 1342 1342
145 Austria 27347 A 1342 1342
146 Austria 27348 T 1342 1342
147 Austria 27349 T 1342 1342
148 Austria 27350 C 1342 1342
149 Austria 27351 T 1342 1342
150 Austria 27352 C 1342 1342
151 Austria 27353 A 1342 1342
152 Austria 27354 A 1342 1342
153 Austria 27355 T 1342 1342
154 Austria 27356 T 1342 1342
155 Austria 27357 A 1342 1342
156 Austria 27358 G 1342 1342
157 Austria 27359 A 1342 1342
158 Austria 27360 T 1342 1342
159 Austria 27361 G 1342 1342
160 Austria 27362 A 1342 1342
161 Austria 27363 A 1342 1342
162 Austria 27364 G T 1342 1341 Glu55*
163 Austria 27365 A 1342 1342
164 Austria 27366 G T 1342 1341 Glu55Asp
165 Austria 27367 C 1342 1342
166 Austria 27368 A 1342 1342
167 Austria 27369 A 1342 1342
168 Austria 27370 C 1342 1342
169 Austria 27371 C 1342 1342
170 Austria 27372 A 1342 1342
171 Austria 27373 A 1342 1342
172 Austria 27374 T 1342 1342
173 Austria 27375 G 1342 1341
174 Austria 27376 G 1342 1342
175 Austria 27377 A 1342 1342
176 Austria 27378 G 1342 1342
177 Austria 27379 A 1342 1341
178 Austria 27380 T 1342 1342
179 Austria 27381 T 1342 1342
180 Austria 27382 G 1342 1342
181 Austria 27383 A 1342 1342
182 Austria 27384 T C 1342 1340 Asp61Asp
183 Austria 27385 T 1342 1342
184 Austria 27386 A 1342 1342
185 Austria 27387 A 1342 1342