National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     186                                        
?                                              
A     3 1                                      
C                                              
D     12     3     1 1                         4
E 1   16     1 1                           2    
F     9         1         1               1    
G                                              
H     3                                       1
I     30               1   1             3 3    
K     12                     1                  
L     24                   4         1          
M     9               2 1               1      
N     12     1                         1        
P     3                                        
Q 1   9                         1 3 1          
R     3                             1 1        
S     12         1               1              
T     9               1       1                
V     9         2     1                        
W 1   3   1               1                    
Y     6   1     1                             1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Australia 27202 A 17216 17216
1 Australia 27203 T 17216 17216
2 Australia 27204 G T 17217 17210 Met1?
3 Australia 27205 T 17217 17215
4 Australia 27206 T 17217 17217
5 Australia 27207 T G 17217 17216 Phe2Leu
6 Australia 27208 C T 17218 17210 His3Tyr
7 Australia 27209 A 17218 17218
8 Australia 27210 T 17218 17216
9 Australia 27211 C 17218 17216
10 Australia 27212 T 17218 17218
11 Australia 27213 C T 17218 17196 Leu4Leu
12 Australia 27214 G T,A 17218 17210 Val5Phe-p.Val5Ile
13 Australia 27215 T 17218 17215
14 Australia 27216 T 17218 17217
15 Australia 27217 G T 17218 17211 Asp6Tyr
16 Australia 27218 A G 17218 17216 Asp6Gly
17 Australia 27219 C T 17218 17211 Asp6Asp
18 Australia 27220 T 17219 17216
19 Australia 27221 T 17219 17218
20 Australia 27222 T C 17221 17219 Phe7Phe
21 Australia 27223 C T 17222 17217 Gln8*
22 Australia 27224 A C,G 17222 17195 Gln8Pro-p.Gln8Arg
23 Australia 27225 G A 17222 17217 Gln8Gln
24 Australia 27226 G T 17222 17219 Val9Phe
25 Australia 27227 T 17222 17222
26 Australia 27228 T 17222 17222
27 Australia 27229 A 17222 17222
28 Australia 27230 C 17224 17222
29 Australia 27231 T 17224 17223
30 Australia 27232 A 17224 17224
31 Australia 27233 T C 17224 17218 Ile11Thr
32 Australia 27234 A 17225 17225
33 Australia 27235 G 17225 17222
34 Australia 27236 C 17226 17224
35 Australia 27237 A T 17226 17225 Ala12Ala
36 Australia 27238 G 17226 17225
37 Australia 27239 A T 17226 17224 Glu13Val
38 Australia 27240 G 17227 17226
39 Australia 27241 A 17227 17226
40 Australia 27242 T 17227 17226
41 Australia 27243 A 17227 17227
42 Australia 27244 T 17227 17226
43 Australia 27245 T 17227 17225
44 Australia 27246 A 17227 17225
45 Australia 27247 C T 17227 17222 Leu16Leu
46 Australia 27248 T 17227 17224
47 Australia 27249 A 17227 17225
48 Australia 27250 A G,C 17226 17223 Ile17Val-p.Ile17Leu
49 Australia 27251 T 17226 17223
50 Australia 27252 T 17226 17225
51 Australia 27253 A G 17226 17224 Ile18Val
52 Australia 27254 T 17226 17225
53 Australia 27255 T 17226 17225
54 Australia 27256 A 17226 17225
55 Australia 27257 T 17226 17226
56 Australia 27258 G 17226 17223
57 Australia 27259 A 17226 17224
58 Australia 27260 G 17227 17226
59 Australia 27261 G T,A 17226 17219 Arg20Ser-p.Arg20Arg
60 Australia 27262 A 17214 17213
61 Australia 27263 C T,A 17214 17208 Thr21Ile-p.Thr21Asn
62 Australia 27264 T 17214 17208
63 Australia 27265 T G 17214 17208 Phe22Val
64 Australia 27266 T 17214 17209
65 Australia 27267 T 17214 17204
66 Australia 27268 A 17214 17201
67 Australia 27269 A 17214 17206
68 Australia 27270 A 17214 17207
69 Australia 27271 G 17214 17205
70 Australia 27272 T 17214 17203
71 Australia 27273 T 17214 17206
72 Australia 27274 T 17214 17207
73 Australia 27275 C 17214 17206
74 Australia 27276 C 17214 17206
75 Australia 27277 A G 17214 17201 Ile26Val
76 Australia 27278 T 17215 17206
77 Australia 27279 T 17215 17207
78 Australia 27280 T 17215 17207
79 Australia 27281 G T 17215 17187 Trp27Leu
80 Australia 27282 G A,C 17215 17198 Trp27*-p.Trp27Cys
81 Australia 27283 A G 17215 17206 Asn28Asp
82 Australia 27284 A 17215 17207
83 Australia 27285 T 17215 17207
84 Australia 27286 C 17216 17207
85 Australia 27287 T 17216 17207
86 Australia 27288 T 17216 17208
87 Australia 27289 G T 17216 17205 Asp30Tyr
88 Australia 27290 A 17215 17205
89 Australia 27291 T 17215 17210
90 Australia 27292 T 17215 17210
91 Australia 27293 A 17215 17209
92 Australia 27294 C T 17215 17205 Tyr31Tyr
93 Australia 27295 A 17215 17213
94 Australia 27296 T 17216 17213
95 Australia 27297 C T 17216 17207 Ile32Ile
96 Australia 27298 A 17216 17213
97 Australia 27299 T C 17215 17196 Ile33Thr
98 Australia 27300 A 17215 17211
99 Australia 27301 A 17215 17213
100 Australia 27302 A 17215 17213
101 Australia 27303 C 17214 17210
102 Australia 27304 C 17213 17210
103 Australia 27305 T G 17213 17203 Leu35Arg
104 Australia 27306 C 17213 17207
105 Australia 27307 A 17213 17207
106 Australia 27308 T 17213 17208
107 Australia 27309 A 17213 17211
108 Australia 27310 A 17213 17210
109 Australia 27311 T C 17213 17209 Ile37Thr
110 Australia 27312 T 17213 17210
111 Australia 27313 A 17213 17208
112 Australia 27314 A 17213 17208
113 Australia 27315 A 17213 17208
114 Australia 27316 A 17213 17210
115 Australia 27317 A 17213 17210
116 Australia 27318 T 17213 17206
117 Australia 27319 T C 17213 17209 Leu40Leu
118 Australia 27320 T 17213 17212
119 Australia 27321 A 17213 17212
120 Australia 27322 T C 17225 17222 Ser41Pro
121 Australia 27323 C T 17225 17220 Ser41Phe
122 Australia 27324 T 17225 17223
123 Australia 27325 A 17225 17222
124 Australia 27326 A T 17225 17222 Lys42Met
125 Australia 27327 G 17226 17220
126 Australia 27328 T 17226 17224
127 Australia 27329 C 17227 17225
128 Australia 27330 A 17227 17226
129 Australia 27331 C 17227 17225
130 Australia 27332 T 17227 17225
131 Australia 27333 A 17227 17226
132 Australia 27334 A 17227 17226
133 Australia 27335 C 17228 17226
134 Australia 27336 T 17228 17225
135 Australia 27337 G 17228 17225
136 Australia 27338 A 17228 17227
137 Australia 27339 G 17228 17227
138 Australia 27340 A 17228 17228
139 Australia 27341 A G 17228 17227 Asn47Ser
140 Australia 27342 T 17228 17225
141 Australia 27343 A 17228 17223
142 Australia 27344 A 17228 17227
143 Australia 27345 A 17228 17227
144 Australia 27346 T 17228 17227
145 Australia 27347 A T,G 17228 17226 Tyr49Phe-p.Tyr49Cys
146 Australia 27348 T 17228 17227
147 Australia 27349 T 17228 17227
148 Australia 27350 C 17228 17227
149 Australia 27351 T 17228 17228
150 Australia 27352 C 17228 17226
151 Australia 27353 A 17229 17228
152 Australia 27354 A G 17229 17228 Gln51Gln
153 Australia 27355 T 17229 17229
154 Australia 27356 T 17229 17229
155 Australia 27357 A G 17229 17228 Leu52Leu
156 Australia 27358 G T 17229 17224 Asp53Tyr
157 Australia 27359 A 17229 17229
158 Australia 27360 T C 17229 17226 Asp53Asp
159 Australia 27361 G 17229 17226
160 Australia 27362 A 17229 17228
161 Australia 27363 A 17229 17228
162 Australia 27364 G T 17229 17226 Glu55*
163 Australia 27365 A T 17229 17226 Glu55Val
164 Australia 27366 G T 17229 17195 Glu55Asp
165 Australia 27367 C 17229 17229
166 Australia 27368 A 17229 17229
167 Australia 27369 A G 17229 17226 Gln56Gln
168 Australia 27370 C 17229 17226
169 Australia 27371 C 17229 17227
170 Australia 27372 A 17229 17228
171 Australia 27373 A 17229 17229
172 Australia 27374 T C,A 17229 17226 Met58Thr-p.Met58Lys
173 Australia 27375 G T 17229 17226 Met58Ile
174 Australia 27376 G 17229 17229
175 Australia 27377 A 17229 17229
176 Australia 27378 G A 17229 17226 Glu59Glu
177 Australia 27379 A 17229 17227
178 Australia 27380 T 17229 17228
179 Australia 27381 T 17229 17227
180 Australia 27382 G C,T 17223 17207 Asp61His-p.Asp61Tyr
181 Australia 27383 A 17221 17221
182 Australia 27384 T C 17220 17187 Asp61Asp
183 Australia 27385 T 17220 17217
184 Australia 27386 A 17218 17218
185 Australia 27387 A 17218 17218