National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                   1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Aruba 27202 A 11 11
1 Aruba 27203 T 11 11
2 Aruba 27204 G 11 11
3 Aruba 27205 T 11 11
4 Aruba 27206 T 11 11
5 Aruba 27207 T 11 11
6 Aruba 27208 C 11 11
7 Aruba 27209 A 11 11
8 Aruba 27210 T 11 11
9 Aruba 27211 C 11 11
10 Aruba 27212 T 11 11
11 Aruba 27213 C 11 11
12 Aruba 27214 G 11 11
13 Aruba 27215 T 11 11
14 Aruba 27216 T 11 11
15 Aruba 27217 G 11 11
16 Aruba 27218 A 11 11
17 Aruba 27219 C 11 11
18 Aruba 27220 T 11 11
19 Aruba 27221 T 11 11
20 Aruba 27222 T 11 11
21 Aruba 27223 C 11 11
22 Aruba 27224 A 11 11
23 Aruba 27225 G 11 11
24 Aruba 27226 G 11 11
25 Aruba 27227 T 11 11
26 Aruba 27228 T 11 11
27 Aruba 27229 A 11 11
28 Aruba 27230 C 11 11
29 Aruba 27231 T 11 11
30 Aruba 27232 A 11 11
31 Aruba 27233 T 11 11
32 Aruba 27234 A 11 11
33 Aruba 27235 G 11 11
34 Aruba 27236 C 11 11
35 Aruba 27237 A 11 11
36 Aruba 27238 G 11 11
37 Aruba 27239 A 11 11
38 Aruba 27240 G 11 11
39 Aruba 27241 A 11 11
40 Aruba 27242 T 11 11
41 Aruba 27243 A 11 11
42 Aruba 27244 T 11 11
43 Aruba 27245 T 11 11
44 Aruba 27246 A 11 11
45 Aruba 27247 C 11 11
46 Aruba 27248 T 11 11
47 Aruba 27249 A 11 11
48 Aruba 27250 A 11 11
49 Aruba 27251 T 11 11
50 Aruba 27252 T 11 11
51 Aruba 27253 A 11 11
52 Aruba 27254 T 11 11
53 Aruba 27255 T 11 11
54 Aruba 27256 A 11 11
55 Aruba 27257 T 11 11
56 Aruba 27258 G 11 11
57 Aruba 27259 A 11 11
58 Aruba 27260 G 11 11
59 Aruba 27261 G 11 11
60 Aruba 27262 A 11 11
61 Aruba 27263 C 11 11
62 Aruba 27264 T 11 11
63 Aruba 27265 T 11 11
64 Aruba 27266 T 11 11
65 Aruba 27267 T 11 11
66 Aruba 27268 A 11 11
67 Aruba 27269 A 11 11
68 Aruba 27270 A 11 11
69 Aruba 27271 G 11 11
70 Aruba 27272 T 11 11
71 Aruba 27273 T 11 11
72 Aruba 27274 T 11 11
73 Aruba 27275 C 11 11
74 Aruba 27276 C 11 11
75 Aruba 27277 A 11 11
76 Aruba 27278 T 11 11
77 Aruba 27279 T 11 11
78 Aruba 27280 T 11 11
79 Aruba 27281 G 11 11
80 Aruba 27282 G 11 11
81 Aruba 27283 A 11 11
82 Aruba 27284 A 11 11
83 Aruba 27285 T 11 11
84 Aruba 27286 C 11 11
85 Aruba 27287 T 11 11
86 Aruba 27288 T 11 11
87 Aruba 27289 G 11 11
88 Aruba 27290 A 11 11
89 Aruba 27291 T 11 11
90 Aruba 27292 T 11 11
91 Aruba 27293 A 11 11
92 Aruba 27294 C T 11 10 Tyr31Tyr
93 Aruba 27295 A 11 11
94 Aruba 27296 T 11 11
95 Aruba 27297 C 11 11
96 Aruba 27298 A 11 11
97 Aruba 27299 T 11 11
98 Aruba 27300 A 11 11
99 Aruba 27301 A 11 11
100 Aruba 27302 A 11 11
101 Aruba 27303 C 11 11
102 Aruba 27304 C 11 11
103 Aruba 27305 T 11 11
104 Aruba 27306 C 11 11
105 Aruba 27307 A 11 11
106 Aruba 27308 T 11 11
107 Aruba 27309 A 11 11
108 Aruba 27310 A 11 11
109 Aruba 27311 T 11 11
110 Aruba 27312 T 11 11
111 Aruba 27313 A 11 11
112 Aruba 27314 A 11 11
113 Aruba 27315 A 11 11
114 Aruba 27316 A 11 11
115 Aruba 27317 A 11 11
116 Aruba 27318 T 11 11
117 Aruba 27319 T 11 11
118 Aruba 27320 T 11 11
119 Aruba 27321 A 11 11
120 Aruba 27322 T 11 11
121 Aruba 27323 C 11 11
122 Aruba 27324 T 11 11
123 Aruba 27325 A 11 11
124 Aruba 27326 A 11 11
125 Aruba 27327 G 11 11
126 Aruba 27328 T 11 11
127 Aruba 27329 C 11 11
128 Aruba 27330 A 11 11
129 Aruba 27331 C 11 11
130 Aruba 27332 T 11 11
131 Aruba 27333 A 11 11
132 Aruba 27334 A 11 11
133 Aruba 27335 C 11 11
134 Aruba 27336 T 11 11
135 Aruba 27337 G 11 11
136 Aruba 27338 A 11 11
137 Aruba 27339 G 11 11
138 Aruba 27340 A 11 11
139 Aruba 27341 A 11 11
140 Aruba 27342 T 11 11
141 Aruba 27343 A 11 11
142 Aruba 27344 A 11 11
143 Aruba 27345 A 11 11
144 Aruba 27346 T 11 11
145 Aruba 27347 A 11 11
146 Aruba 27348 T 11 11
147 Aruba 27349 T 11 11
148 Aruba 27350 C 11 11
149 Aruba 27351 T 11 11
150 Aruba 27352 C 11 11
151 Aruba 27353 A 11 11
152 Aruba 27354 A 11 11
153 Aruba 27355 T 11 11
154 Aruba 27356 T 11 11
155 Aruba 27357 A 11 11
156 Aruba 27358 G 11 11
157 Aruba 27359 A 11 11
158 Aruba 27360 T 11 11
159 Aruba 27361 G 11 11
160 Aruba 27362 A 11 11
161 Aruba 27363 A 11 11
162 Aruba 27364 G 11 11
163 Aruba 27365 A 11 11
164 Aruba 27366 G 11 11
165 Aruba 27367 C 11 11
166 Aruba 27368 A 11 11
167 Aruba 27369 A 11 11
168 Aruba 27370 C 11 11
169 Aruba 27371 C 11 11
170 Aruba 27372 A 11 11
171 Aruba 27373 A 11 11
172 Aruba 27374 T 11 11
173 Aruba 27375 G 11 11
174 Aruba 27376 G 11 11
175 Aruba 27377 A 11 11
176 Aruba 27378 G 11 11
177 Aruba 27379 A 11 11
178 Aruba 27380 T 11 11
179 Aruba 27381 T 11 11
180 Aruba 27382 G 11 11
181 Aruba 27383 A 11 11
182 Aruba 27384 T 11 11
183 Aruba 27385 T 11 11
184 Aruba 27386 A 11 11
185 Aruba 27387 A 11 11