National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Andorra 27202 A 1 1
1 Andorra 27203 T 1 1
2 Andorra 27204 G 1 1
3 Andorra 27205 T 1 1
4 Andorra 27206 T 1 1
5 Andorra 27207 T 1 1
6 Andorra 27208 C 1 1
7 Andorra 27209 A 1 1
8 Andorra 27210 T 1 1
9 Andorra 27211 C 1 1
10 Andorra 27212 T 1 1
11 Andorra 27213 C 1 1
12 Andorra 27214 G 1 1
13 Andorra 27215 T 1 1
14 Andorra 27216 T 1 1
15 Andorra 27217 G 1 1
16 Andorra 27218 A 1 1
17 Andorra 27219 C 1 1
18 Andorra 27220 T 1 1
19 Andorra 27221 T 1 1
20 Andorra 27222 T 1 1
21 Andorra 27223 C 1 1
22 Andorra 27224 A 1 1
23 Andorra 27225 G 1 1
24 Andorra 27226 G 1 1
25 Andorra 27227 T 1 1
26 Andorra 27228 T 1 1
27 Andorra 27229 A 1 1
28 Andorra 27230 C 1 1
29 Andorra 27231 T 1 1
30 Andorra 27232 A 1 1
31 Andorra 27233 T 1 1
32 Andorra 27234 A 1 1
33 Andorra 27235 G 1 1
34 Andorra 27236 C 1 1
35 Andorra 27237 A 1 1
36 Andorra 27238 G 1 1
37 Andorra 27239 A 1 1
38 Andorra 27240 G 1 1
39 Andorra 27241 A 1 1
40 Andorra 27242 T 1 1
41 Andorra 27243 A 1 1
42 Andorra 27244 T 1 1
43 Andorra 27245 T 1 1
44 Andorra 27246 A 1 1
45 Andorra 27247 C 1 1
46 Andorra 27248 T 1 1
47 Andorra 27249 A 1 1
48 Andorra 27250 A 1 1
49 Andorra 27251 T 1 1
50 Andorra 27252 T 1 1
51 Andorra 27253 A 1 1
52 Andorra 27254 T 1 1
53 Andorra 27255 T 1 1
54 Andorra 27256 A 1 1
55 Andorra 27257 T 1 1
56 Andorra 27258 G 1 1
57 Andorra 27259 A 1 1
58 Andorra 27260 G 1 1
59 Andorra 27261 G 1 1
60 Andorra 27262 A 1 1
61 Andorra 27263 C 1 1
62 Andorra 27264 T 1 1
63 Andorra 27265 T 1 1
64 Andorra 27266 T 1 1
65 Andorra 27267 T 1 1
66 Andorra 27268 A 1 1
67 Andorra 27269 A 1 1
68 Andorra 27270 A 1 1
69 Andorra 27271 G 1 1
70 Andorra 27272 T 1 1
71 Andorra 27273 T 1 1
72 Andorra 27274 T 1 1
73 Andorra 27275 C 1 1
74 Andorra 27276 C 1 1
75 Andorra 27277 A 1 1
76 Andorra 27278 T 1 1
77 Andorra 27279 T 1 1
78 Andorra 27280 T 1 1
79 Andorra 27281 G 1 1
80 Andorra 27282 G 1 1
81 Andorra 27283 A 1 1
82 Andorra 27284 A 1 1
83 Andorra 27285 T 1 1
84 Andorra 27286 C 1 1
85 Andorra 27287 T 1 1
86 Andorra 27288 T 1 1
87 Andorra 27289 G 1 1
88 Andorra 27290 A 1 1
89 Andorra 27291 T 1 1
90 Andorra 27292 T 1 1
91 Andorra 27293 A 1 1
92 Andorra 27294 C 1 1
93 Andorra 27295 A 1 1
94 Andorra 27296 T 1 1
95 Andorra 27297 C 1 1
96 Andorra 27298 A 1 1
97 Andorra 27299 T 1 1
98 Andorra 27300 A 1 1
99 Andorra 27301 A 1 1
100 Andorra 27302 A 1 1
101 Andorra 27303 C 1 1
102 Andorra 27304 C 1 1
103 Andorra 27305 T 1 1
104 Andorra 27306 C 1 1
105 Andorra 27307 A 1 1
106 Andorra 27308 T 1 1
107 Andorra 27309 A 1 1
108 Andorra 27310 A 1 1
109 Andorra 27311 T 1 1
110 Andorra 27312 T 1 1
111 Andorra 27313 A 1 1
112 Andorra 27314 A 1 1
113 Andorra 27315 A 1 1
114 Andorra 27316 A 1 1
115 Andorra 27317 A 1 1
116 Andorra 27318 T 1 1
117 Andorra 27319 T 1 1
118 Andorra 27320 T 1 1
119 Andorra 27321 A 1 1
120 Andorra 27322 T 1 1
121 Andorra 27323 C 1 1
122 Andorra 27324 T 1 1
123 Andorra 27325 A 1 1
124 Andorra 27326 A 1 1
125 Andorra 27327 G 1 1
126 Andorra 27328 T 1 1
127 Andorra 27329 C 1 1
128 Andorra 27330 A 1 1
129 Andorra 27331 C 1 1
130 Andorra 27332 T 1 1
131 Andorra 27333 A 1 1
132 Andorra 27334 A 1 1
133 Andorra 27335 C 1 1
134 Andorra 27336 T 1 1
135 Andorra 27337 G 1 1
136 Andorra 27338 A 1 1
137 Andorra 27339 G 1 1
138 Andorra 27340 A 1 1
139 Andorra 27341 A 1 1
140 Andorra 27342 T 1 1
141 Andorra 27343 A 1 1
142 Andorra 27344 A 1 1
143 Andorra 27345 A 1 1
144 Andorra 27346 T 1 1
145 Andorra 27347 A 1 1
146 Andorra 27348 T 1 1
147 Andorra 27349 T 1 1
148 Andorra 27350 C 1 1
149 Andorra 27351 T 1 1
150 Andorra 27352 C 1 1
151 Andorra 27353 A 1 1
152 Andorra 27354 A 1 1
153 Andorra 27355 T 1 1
154 Andorra 27356 T 1 1
155 Andorra 27357 A 1 1
156 Andorra 27358 G 1 1
157 Andorra 27359 A 1 1
158 Andorra 27360 T 1 1
159 Andorra 27361 G 1 1
160 Andorra 27362 A 1 1
161 Andorra 27363 A 1 1
162 Andorra 27364 G 1 1
163 Andorra 27365 A 1 1
164 Andorra 27366 G 1 1
165 Andorra 27367 C 1 1
166 Andorra 27368 A 1 1
167 Andorra 27369 A 1 1
168 Andorra 27370 C 1 1
169 Andorra 27371 C 1 1
170 Andorra 27372 A 1 1
171 Andorra 27373 A 1 1
172 Andorra 27374 T 1 1
173 Andorra 27375 G 1 1
174 Andorra 27376 G 1 1
175 Andorra 27377 A 1 1
176 Andorra 27378 G 1 1
177 Andorra 27379 A 1 1
178 Andorra 27380 T 1 1
179 Andorra 27381 T 1 1
180 Andorra 27382 G 1 1
181 Andorra 27383 A 1 1
182 Andorra 27384 T 1 1
183 Andorra 27385 T 1 1
184 Andorra 27386 A 1 1
185 Andorra 27387 A 1 1