National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Algeria 27202 A 18 18
1 Algeria 27203 T 18 18
2 Algeria 27204 G 18 18
3 Algeria 27205 T 18 18
4 Algeria 27206 T 18 18
5 Algeria 27207 T 18 18
6 Algeria 27208 C 18 18
7 Algeria 27209 A 18 18
8 Algeria 27210 T 18 18
9 Algeria 27211 C 18 18
10 Algeria 27212 T 18 18
11 Algeria 27213 C 18 18
12 Algeria 27214 G 18 18
13 Algeria 27215 T 18 18
14 Algeria 27216 T 18 18
15 Algeria 27217 G 18 18
16 Algeria 27218 A 18 18
17 Algeria 27219 C 18 18
18 Algeria 27220 T 18 18
19 Algeria 27221 T 18 18
20 Algeria 27222 T 18 18
21 Algeria 27223 C 18 18
22 Algeria 27224 A 18 18
23 Algeria 27225 G 18 18
24 Algeria 27226 G 18 18
25 Algeria 27227 T 18 18
26 Algeria 27228 T 18 18
27 Algeria 27229 A 18 18
28 Algeria 27230 C 18 18
29 Algeria 27231 T 18 18
30 Algeria 27232 A 18 18
31 Algeria 27233 T 18 18
32 Algeria 27234 A 18 18
33 Algeria 27235 G 18 18
34 Algeria 27236 C 18 18
35 Algeria 27237 A 18 18
36 Algeria 27238 G 18 18
37 Algeria 27239 A 18 18
38 Algeria 27240 G 18 18
39 Algeria 27241 A 18 18
40 Algeria 27242 T 18 18
41 Algeria 27243 A 18 18
42 Algeria 27244 T 18 18
43 Algeria 27245 T 18 18
44 Algeria 27246 A 18 18
45 Algeria 27247 C 18 18
46 Algeria 27248 T 18 18
47 Algeria 27249 A 18 18
48 Algeria 27250 A 18 18
49 Algeria 27251 T 18 18
50 Algeria 27252 T 18 18
51 Algeria 27253 A 18 18
52 Algeria 27254 T 18 18
53 Algeria 27255 T 18 18
54 Algeria 27256 A 18 18
55 Algeria 27257 T 18 18
56 Algeria 27258 G 18 18
57 Algeria 27259 A 18 18
58 Algeria 27260 G 18 18
59 Algeria 27261 G 18 18
60 Algeria 27262 A 18 18
61 Algeria 27263 C 18 18
62 Algeria 27264 T 18 18
63 Algeria 27265 T 18 18
64 Algeria 27266 T 18 18
65 Algeria 27267 T 18 18
66 Algeria 27268 A 18 18
67 Algeria 27269 A 18 18
68 Algeria 27270 A 18 18
69 Algeria 27271 G 18 18
70 Algeria 27272 T 18 18
71 Algeria 27273 T 18 18
72 Algeria 27274 T 18 18
73 Algeria 27275 C 18 18
74 Algeria 27276 C 18 18
75 Algeria 27277 A 18 18
76 Algeria 27278 T 18 18
77 Algeria 27279 T 18 18
78 Algeria 27280 T 18 18
79 Algeria 27281 G 18 18
80 Algeria 27282 G 18 18
81 Algeria 27283 A 18 18
82 Algeria 27284 A 18 18
83 Algeria 27285 T 18 18
84 Algeria 27286 C 18 18
85 Algeria 27287 T 18 18
86 Algeria 27288 T 18 18
87 Algeria 27289 G 18 18
88 Algeria 27290 A 18 18
89 Algeria 27291 T 18 18
90 Algeria 27292 T 18 18
91 Algeria 27293 A 18 18
92 Algeria 27294 C 18 18
93 Algeria 27295 A 18 18
94 Algeria 27296 T 18 18
95 Algeria 27297 C 18 18
96 Algeria 27298 A 18 18
97 Algeria 27299 T 18 18
98 Algeria 27300 A 18 18
99 Algeria 27301 A 18 18
100 Algeria 27302 A 18 18
101 Algeria 27303 C 18 18
102 Algeria 27304 C 18 18
103 Algeria 27305 T 18 18
104 Algeria 27306 C 18 18
105 Algeria 27307 A 18 18
106 Algeria 27308 T 18 18
107 Algeria 27309 A 18 18
108 Algeria 27310 A 18 18
109 Algeria 27311 T 18 18
110 Algeria 27312 T 18 18
111 Algeria 27313 A 18 18
112 Algeria 27314 A 18 18
113 Algeria 27315 A 18 18
114 Algeria 27316 A 18 18
115 Algeria 27317 A 18 18
116 Algeria 27318 T 18 18
117 Algeria 27319 T 18 18
118 Algeria 27320 T 18 18
119 Algeria 27321 A 18 18
120 Algeria 27322 T 18 18
121 Algeria 27323 C 18 18
122 Algeria 27324 T 18 18
123 Algeria 27325 A 18 18
124 Algeria 27326 A 18 18
125 Algeria 27327 G 18 18
126 Algeria 27328 T 18 18
127 Algeria 27329 C 18 18
128 Algeria 27330 A 18 18
129 Algeria 27331 C 18 18
130 Algeria 27332 T 18 18
131 Algeria 27333 A 18 18
132 Algeria 27334 A 18 18
133 Algeria 27335 C 18 18
134 Algeria 27336 T 18 18
135 Algeria 27337 G 18 18
136 Algeria 27338 A 18 18
137 Algeria 27339 G 18 18
138 Algeria 27340 A 18 18
139 Algeria 27341 A 18 18
140 Algeria 27342 T 18 18
141 Algeria 27343 A 18 18
142 Algeria 27344 A 18 18
143 Algeria 27345 A 18 18
144 Algeria 27346 T 18 18
145 Algeria 27347 A 18 18
146 Algeria 27348 T 18 18
147 Algeria 27349 T 18 18
148 Algeria 27350 C 18 18
149 Algeria 27351 T 18 18
150 Algeria 27352 C 18 18
151 Algeria 27353 A 18 18
152 Algeria 27354 A 18 18
153 Algeria 27355 T 18 18
154 Algeria 27356 T 18 18
155 Algeria 27357 A 18 18
156 Algeria 27358 G 18 18
157 Algeria 27359 A 18 18
158 Algeria 27360 T 18 18
159 Algeria 27361 G 18 18
160 Algeria 27362 A 18 18
161 Algeria 27363 A 18 18
162 Algeria 27364 G 18 18
163 Algeria 27365 A 18 18
164 Algeria 27366 G 18 18
165 Algeria 27367 C 18 18
166 Algeria 27368 A 18 18
167 Algeria 27369 A 18 18
168 Algeria 27370 C 18 18
169 Algeria 27371 C 18 18
170 Algeria 27372 A 18 18
171 Algeria 27373 A 18 18
172 Algeria 27374 T 18 18
173 Algeria 27375 G 18 18
174 Algeria 27376 G 18 18
175 Algeria 27377 A 18 18
176 Algeria 27378 G 18 18
177 Algeria 27379 A 18 18
178 Algeria 27380 T 18 18
179 Algeria 27381 T 18 18
180 Algeria 27382 G 18 18
181 Algeria 27383 A 18 18
182 Algeria 27384 T 18 18
183 Algeria 27385 T 18 18
184 Algeria 27386 A 18 18
185 Algeria 27387 A 18 18