National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A D E F H I K L M N P Q R S T V W Y
*     2                                    
-     186                                    
?                                          
A     3                                    
D     12                                    
E     16                                    
F     9                                    
H     3                                    
I     30                                    
K     12                                    
L     24                                    
M     9                                    
N     12                                    
P     3                                    
Q     9                                    
R     3                                    
S     12                                    
T     9                                    
V     9                                    
W     3                                    
Y     6                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Albania 27202 A 1 1
1 Albania 27203 T 1 1
2 Albania 27204 G 1 1
3 Albania 27205 T 1 1
4 Albania 27206 T 1 1
5 Albania 27207 T 1 1
6 Albania 27208 C 1 1
7 Albania 27209 A 1 1
8 Albania 27210 T 1 1
9 Albania 27211 C 1 1
10 Albania 27212 T 1 1
11 Albania 27213 C 1 1
12 Albania 27214 G 1 1
13 Albania 27215 T 1 1
14 Albania 27216 T 1 1
15 Albania 27217 G 1 1
16 Albania 27218 A 1 1
17 Albania 27219 C 1 1
18 Albania 27220 T 1 1
19 Albania 27221 T 1 1
20 Albania 27222 T 1 1
21 Albania 27223 C 1 1
22 Albania 27224 A 1 1
23 Albania 27225 G 1 1
24 Albania 27226 G 1 1
25 Albania 27227 T 1 1
26 Albania 27228 T 1 1
27 Albania 27229 A 1 1
28 Albania 27230 C 1 1
29 Albania 27231 T 1 1
30 Albania 27232 A 1 1
31 Albania 27233 T 1 1
32 Albania 27234 A 1 1
33 Albania 27235 G 1 1
34 Albania 27236 C 1 1
35 Albania 27237 A 1 1
36 Albania 27238 G 1 1
37 Albania 27239 A 1 1
38 Albania 27240 G 1 1
39 Albania 27241 A 1 1
40 Albania 27242 T 1 1
41 Albania 27243 A 1 1
42 Albania 27244 T 1 1
43 Albania 27245 T 1 1
44 Albania 27246 A 1 1
45 Albania 27247 C 1 1
46 Albania 27248 T 1 1
47 Albania 27249 A 1 1
48 Albania 27250 A 1 1
49 Albania 27251 T 1 1
50 Albania 27252 T 1 1
51 Albania 27253 A 1 1
52 Albania 27254 T 1 1
53 Albania 27255 T 1 1
54 Albania 27256 A 1 1
55 Albania 27257 T 1 1
56 Albania 27258 G 1 1
57 Albania 27259 A 1 1
58 Albania 27260 G 1 1
59 Albania 27261 G 1 1
60 Albania 27262 A 1 1
61 Albania 27263 C 1 1
62 Albania 27264 T 1 1
63 Albania 27265 T 1 1
64 Albania 27266 T 1 1
65 Albania 27267 T 1 1
66 Albania 27268 A 1 1
67 Albania 27269 A 1 1
68 Albania 27270 A 1 1
69 Albania 27271 G 1 1
70 Albania 27272 T 1 1
71 Albania 27273 T 1 1
72 Albania 27274 T 1 1
73 Albania 27275 C 1 1
74 Albania 27276 C 1 1
75 Albania 27277 A 1 1
76 Albania 27278 T 1 1
77 Albania 27279 T 1 1
78 Albania 27280 T 1 1
79 Albania 27281 G 1 1
80 Albania 27282 G 1 1
81 Albania 27283 A 1 1
82 Albania 27284 A 1 1
83 Albania 27285 T 1 1
84 Albania 27286 C 1 1
85 Albania 27287 T 1 1
86 Albania 27288 T 1 1
87 Albania 27289 G 1 1
88 Albania 27290 A 1 1
89 Albania 27291 T 1 1
90 Albania 27292 T 1 1
91 Albania 27293 A 1 1
92 Albania 27294 C 1 1
93 Albania 27295 A 1 1
94 Albania 27296 T 1 1
95 Albania 27297 C 1 1
96 Albania 27298 A 1 1
97 Albania 27299 T 1 1
98 Albania 27300 A 1 1
99 Albania 27301 A 1 1
100 Albania 27302 A 1 1
101 Albania 27303 C 1 1
102 Albania 27304 C 1 1
103 Albania 27305 T 1 1
104 Albania 27306 C 1 1
105 Albania 27307 A 1 1
106 Albania 27308 T 1 1
107 Albania 27309 A 1 1
108 Albania 27310 A 1 1
109 Albania 27311 T 1 1
110 Albania 27312 T 1 1
111 Albania 27313 A 1 1
112 Albania 27314 A 1 1
113 Albania 27315 A 1 1
114 Albania 27316 A 1 1
115 Albania 27317 A 1 1
116 Albania 27318 T 1 1
117 Albania 27319 T 1 1
118 Albania 27320 T 1 1
119 Albania 27321 A 1 1
120 Albania 27322 T 1 1
121 Albania 27323 C 1 1
122 Albania 27324 T 1 1
123 Albania 27325 A 1 1
124 Albania 27326 A 1 1
125 Albania 27327 G 1 1
126 Albania 27328 T 1 1
127 Albania 27329 C 1 1
128 Albania 27330 A 1 1
129 Albania 27331 C 1 1
130 Albania 27332 T 1 1
131 Albania 27333 A 1 1
132 Albania 27334 A 1 1
133 Albania 27335 C 1 1
134 Albania 27336 T 1 1
135 Albania 27337 G 1 1
136 Albania 27338 A 1 1
137 Albania 27339 G 1 1
138 Albania 27340 A 1 1
139 Albania 27341 A 1 1
140 Albania 27342 T 1 1
141 Albania 27343 A 1 1
142 Albania 27344 A 1 1
143 Albania 27345 A 1 1
144 Albania 27346 T 1 1
145 Albania 27347 A 1 1
146 Albania 27348 T 1 1
147 Albania 27349 T 1 1
148 Albania 27350 C 1 1
149 Albania 27351 T 1 1
150 Albania 27352 C 1 1
151 Albania 27353 A 1 1
152 Albania 27354 A 1 1
153 Albania 27355 T 1 1
154 Albania 27356 T 1 1
155 Albania 27357 A 1 1
156 Albania 27358 G 1 1
157 Albania 27359 A 1 1
158 Albania 27360 T 1 1
159 Albania 27361 G 1 1
160 Albania 27362 A 1 1
161 Albania 27363 A 1 1
162 Albania 27364 G 1 1
163 Albania 27365 A 1 1
164 Albania 27366 G 1 1
165 Albania 27367 C 1 1
166 Albania 27368 A 1 1
167 Albania 27369 A 1 1
168 Albania 27370 C 1 1
169 Albania 27371 C 1 1
170 Albania 27372 A 1 1
171 Albania 27373 A 1 1
172 Albania 27374 T 1 1
173 Albania 27375 G 1 1
174 Albania 27376 G 1 1
175 Albania 27377 A 1 1
176 Albania 27378 G 1 1
177 Albania 27379 A 1 1
178 Albania 27380 T 1 1
179 Albania 27381 T 1 1
180 Albania 27382 G 1 1
181 Albania 27383 A 1 1
182 Albania 27384 T 1 1
183 Albania 27385 T 1 1
184 Albania 27386 A 1 1
185 Albania 27387 A 1 1